RNA id: TU186034


Basic Information

Item Value
RNA id TU186034
length 205
lncRNA type read_through
GC content 0.36
exon number 1
gene id G163749
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10490782 ~ 10490986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACACATCAATGGGTGAGTTTAGGGACAGCATTTATTGTGTTAATTCTGACACATTCACTGAGTCAATGATTTTAACACAGTGAATGTGTCAGGAAGGTTAACCAGAGGCAGAGGTGGACATTCCAGGGGTCAGAAAGTAAAAGTCCTGCCATATTTTTATTCCACCCACTGAAGCAGTGTTAAAGTTAATGAGATAATTAAGTGTTTAATTGAGTGATGATTGACCATTATTGAAGACACCTGATGATAACAAGCAGAATCACCAAAGGAGAAAATCACAATTTTTAAGAAACCATCACAGAGATCAGAGTTTGCTTTAGTTGGGCTCTTGACCCTTGACTTTTTAATATTAGATTTTGTTTGGGCTGTTGTAGCTGAGTTATAACAACCTGACAAGCAAAGAGAAAAGATGATCAGGAGATGTTGGTTATGTTTTCACATAATCATTATTTGATCTGAACTCATTTACAGCCCAATCTCTGAGTTAGATTTACATTATTGATTACAGCAGCACTGTGATTCTACAGCACAAGATCAGCTTTATCAACATAATCTGAAGGATTTAGCAAAAGCAAAAAAACTCGCTCTCATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185997 lncRNA downstream 59723 10237639 ~ 10237733 (-) True G163712
TU186575 lncRNA downstream 72568 10222447 ~ 10224888 (-) True G164232
TU186564 lncRNA downstream 86647 10203655 ~ 10210809 (-) True G164224
TU186024 lncRNA downstream 94982 10200596 ~ 10202474 (-) True G163739
TU186098 lncRNA downstream 110866 10184024 ~ 10186590 (-) True G163813
TU186042 lncRNA upstream 15808 10506794 ~ 10509132 (-) True G163757
TU186636 lncRNA upstream 25462 10516448 ~ 10516680 (-) True G164284
TU186637 lncRNA upstream 25868 10516854 ~ 10517084 (-) True G164285
TU186641 lncRNA upstream 43529 10534515 ~ 10565796 (-) True G164289
TU185926 lncRNA upstream 135521 10626507 ~ 10629824 (-) True G163648
CI01000030_10280046_10287211.mRNA mRNA downstream 10206 10279978 ~ 10287250 (-) False CI01000030_10280046_10287211
CI01000030_10227153_10232109.mRNA mRNA downstream 64820 10227074 ~ 10232636 (-) True CI01000030_10227153_10232109
CI01000030_10189939_10194778.mRNA mRNA downstream 102518 10189777 ~ 10194938 (-) True CI01000030_10189939_10194778
CI01000030_10172789_10173932.mRNA mRNA downstream 123460 10172737 ~ 10173996 (-) True CI01000030_10172789_10173932
CI01000030_10154139_10158476.mRNA mRNA downstream 138724 10153704 ~ 10158732 (-) True CI01000030_10154139_10158476
CI01000030_10552198_10557500.mRNA mRNA upstream 61079 10552065 ~ 10557995 (-) True CI01000030_10552198_10557500
CI01000030_10577987_10580431.mRNA mRNA upstream 86958 10577944 ~ 10580726 (-) True CI01000030_10577987_10580431
CI01000030_10592588_10595113.mRNA mRNA upstream 100768 10591754 ~ 10595302 (-) True CI01000030_10592588_10595113
CI01000030_10635543_10640525.mRNA mRNA upstream 144431 10635417 ~ 10640608 (-) True CI01000030_10635543_10640525
CI01000030_10654923_10662255.mRNA mRNA upstream 163930 10654916 ~ 10663268 (-) True CI01000030_10654923_10662255
TU186002 other downstream 175736 10121592 ~ 10121720 (-) True G163717
TU186385 other downstream 821192 9475188 ~ 9476264 (-) True G164071
TU185995 other downstream 995307 9287206 ~ 9302149 (-) True G163710
TU186160 other downstream 1363474 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 2104970 8192404 ~ 8192486 (-) True G163498
TU186808 other upstream 1003352 11512598 ~ 11512682 (-) True G164443

Expression Profile