Gene
RNA
| Item | Value |
|---|---|
| gene id | G164094 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 9544721 ~ 9544941 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU186425 | True | 221 | lncRNA | 0.52 | 1 | 9544721 | 9544941 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_09500443_09502785 | NA | coding | downstream | 41859 | 9500263 ~ 9502862 (-) |
| CI01000030_09448873_09453673 | NA | coding | downstream | 90629 | 9448772 ~ 9454092 (-) |
| CI01000030_09433282_09440636 | NA | coding | downstream | 103633 | 9432916 ~ 9441088 (-) |
| CI01000030_09382055_09418356 | NA | coding | downstream | 125674 | 9381984 ~ 9419047 (-) |
| CI01000030_09277337_09294501 | NA | coding | downstream | 249919 | 9276431 ~ 9294802 (-) |
| CI01000030_09561245_09573575 | NA | coding | upstream | 16221 | 9561162 ~ 9574107 (-) |
| CI01000030_09579086_09594020 | NA | coding | upstream | 34123 | 9579064 ~ 9594113 (-) |
| CI01000030_09639163_09647509 | NA | coding | upstream | 93201 | 9638142 ~ 9647564 (-) |
| CI01000030_09683547_09689191 | NA | coding | upstream | 137358 | 9682299 ~ 9689387 (-) |
| CI01000030_09698618_09704345 | NA | coding | upstream | 153656 | 9698597 ~ 9704405 (-) |
| G164092 | NA | non-coding | downstream | 3659 | 9540767 ~ 9541062 (-) |
| G164084 | NA | non-coding | downstream | 5525 | 9517539 ~ 9539196 (-) |
| G164076 | NA | non-coding | downstream | 44848 | 9499417 ~ 9499873 (-) |
| G164074 | NA | non-coding | downstream | 51118 | 9493326 ~ 9493603 (-) |
| G164072 | NA | non-coding | downstream | 57542 | 9486466 ~ 9487179 (-) |
| G163807 | NA | non-coding | upstream | 2354 | 9547295 ~ 9727420 (-) |
| G164097 | NA | non-coding | upstream | 10700 | 9555641 ~ 9556172 (-) |
| G163760 | NA | non-coding | upstream | 84959 | 9629900 ~ 9635162 (-) |
| G163784 | NA | non-coding | upstream | 181664 | 9726605 ~ 9847985 (-) |
| G163684 | NA | non-coding | upstream | 188771 | 9733712 ~ 9805881 (-) |
| G164071 | NA | other | downstream | 68457 | 9475188 ~ 9476264 (-) |
| G163873 | NA | other | downstream | 610739 | 8933413 ~ 8933982 (-) |
| CI01000030_08185866_08194632 | NA | other | downstream | 1352235 | 8184897 ~ 8197266 (-) |
| CI01000030_07788973_07791700 | TUSC2B, TUSC2 | other | downstream | 1752339 | 7788797 ~ 7792198 (-) |
| CI01000030_10103451_10131419 | NA | other | upstream | 570574 | 10102944 ~ 10133765 (-) |
| CI01000030_10343879_10366274 | NA | other | upstream | 820476 | 10343865 ~ 10366508 (-) |
| CI01000030_11494792_11495184 | CTXN1 | other | upstream | 1949397 | 11494183 ~ 11495854 (-) |
