RNA id: TU185978


Basic Information

Item Value
RNA id TU185978
length 624
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G163693
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9217690 ~ 9218744 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGATGCTGCTGCTGGTGATGATCCGTAGTTGATAAACTCCAGAGTCTGTGTTTCTGGTGTTTGTGATGGTCAGAGATCCAGTCTGATGATCCAGCTTCAGTCTGTCTCTGAATCTCTCAGTACCTTCAATACACTGAACATCTGTACAGATCTTACTCTGATCTCCAGTGATTTCAGCAATGCGAATGGCATTAAAATACCATCTAATCTTTTCTTGTTTGTCTGTTTCAACATCAGTGTGTAGAGTGACTGAATCTCCTTCCATCACAAAAGCTGACTCTTCATCTGTATCACCACTGAAAAAAACTATGAACAGTAACAGTGAAGATCTTTGTGCTGATTCTGCTGCTGTTGATCTTTAGTTTATAAACTCCAGAGTCTGTGGGTCTGGTGCCTTTGATGGTCAGAGATCCAGTCTGATGCTGCAGTCTGTTTCTGAATCTCTCTTTACACTGTTGATCTTCACAGATCTTACTCTGAGCTCCACTGATTTCAGCAATGAGAATGTCATTCTCCAATGTCAAATACCACCTGATATTTTCTTGTTGGTTTGTTTCAACATCAGTGTTTAGAGTGATTGATTCTCCCTCCATCACTGACAATCTCTCTGTACCAACACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186287 lncRNA downstream 20501 9195924 ~ 9197189 (-) True G163988
TU185929 lncRNA downstream 41439 9175314 ~ 9176251 (-) True G163650
TU186269 lncRNA downstream 49510 9165934 ~ 9168180 (-) True G163971
TU186265 lncRNA downstream 67344 9149644 ~ 9150346 (-) False G163970
TU186262 lncRNA downstream 67344 9149704 ~ 9150346 (-) True G163970
TU186136 lncRNA upstream 13861 9232605 ~ 9234910 (-) True G163851
TU186303 lncRNA upstream 43109 9261853 ~ 9270207 (-) True G164000
TU186312 lncRNA upstream 64133 9282877 ~ 9283122 (-) True G164005
TU186313 lncRNA upstream 64544 9283288 ~ 9283618 (-) True G164006
TU186314 lncRNA upstream 65577 9284321 ~ 9284521 (-) True G164007
CI01000030_09176691_09178066.mRNA mRNA downstream 39624 9176645 ~ 9178066 (-) True CI01000030_09176691_09178066
CI01000030_09038299_09059689.mRNA mRNA downstream 157670 9038248 ~ 9060020 (-) True CI01000030_09038299_09059689
CI01000030_08934545_08939716.mRNA mRNA downstream 277971 8934243 ~ 8939719 (-) False CI01000030_08934545_08939716
CI01000030_08919811_08923927.mRNA mRNA downstream 293763 8919555 ~ 8923927 (-) True CI01000030_08919811_08923927
CI01000030_08880986_08884756.mRNA mRNA downstream 332919 8880953 ~ 8884771 (-) True CI01000030_08880986_08884756
CI01000030_09225959_09236989.mRNA mRNA upstream 6588 9225332 ~ 9239282 (-) False CI01000030_09225959_09236989
CI01000030_09253701_09256358.mRNA mRNA upstream 33371 9252115 ~ 9257790 (-) True CI01000030_09253701_09256358
CI01000030_09277337_09294501.mRNA mRNA upstream 57687 9276431 ~ 9294802 (-) False CI01000030_09277337_09294501
CI01000030_09382055_09418356.mRNA mRNA upstream 163240 9381984 ~ 9419047 (-) True CI01000030_09382055_09418356
CI01000030_09433282_09440636.mRNA mRNA upstream 214172 9432916 ~ 9441088 (-) True CI01000030_09433282_09440636
TU186160 other downstream 283708 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1025204 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1425308 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1479686 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 2067546 7149474 ~ 7150144 (-) True G163139
TU185995 other upstream 68462 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 256444 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 896771 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1066985 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 1128616 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087

Expression Profile