RNA id: TU185314


Basic Information

Item Value
RNA id TU185314
length 315
lncRNA type sense_over
GC content 0.42
exon number 1
gene id G163135
representative False

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7151875 ~ 7152529 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATTACCAGTGAACGCCCTTCATCATCAAGCACAGAATGTGTCCTGCTTTGTTCAGCGGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGCGTGTCTGATCTCAACAACAGCATCTCTCTACCTCTGGAGATTGAATGTCTGGATGATTCCTACAGCTGTGTGCTGAACAATCCCATCAGAAACCAAACTAAACTTCTTAACAACACTGAACTCTGTCAACCATGTCCAGGCGCAGGTTCCTCAGACTCTGTCCACTGTTGTGGTTTCACTGAAGCTGTGATTCGATTGGTCATCTCTGCTGTGGTGGTTGTGGCTACTGTTGCCATAGTGGTTTATGACATCACATCAAGAAGAGGAGAAGAGAAGCAGTGAAAACAGATTTCAACAGCCGAGCTTGACTTTTGCAATGTTTATGCTAATTAAACAATAGCACACAAGCAAAACTGCTGCTGTGTTTGGTCTGTGTTTTTGCCCAGTTTTTGCCATTCAGACTGATCAACATTACCAATATTTTTATGACCAATATTTATAATAATAATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185340 lncRNA downstream 13641 7132655 ~ 7138574 (-) True G163147
TU185339 lncRNA downstream 20725 7131115 ~ 7131490 (-) True G163146
TU185278 lncRNA downstream 67637 7067348 ~ 7084578 (-) True G163118
TU185267 lncRNA downstream 114003 7037748 ~ 7038212 (-) True G163108
TU185262 lncRNA downstream 131578 7020363 ~ 7020637 (-) True G163103
TU185366 lncRNA upstream 26859 7181674 ~ 7182976 (-) False G163161
TU185368 lncRNA upstream 26859 7181674 ~ 7183072 (-) True G163161
TU185402 lncRNA upstream 69176 7223991 ~ 7306353 (-) False G163177
TU185401 lncRNA upstream 141435 7296250 ~ 7306353 (-) True G163177
TU185469 lncRNA upstream 156458 7311273 ~ 7311507 (-) True G163240
CI01000030_07118097_07122890.mRNA mRNA downstream 29235 7118097 ~ 7122980 (-) True CI01000030_07118097_07122890
CI01000030_07072355_07077515.mRNA mRNA downstream 74700 7071881 ~ 7077515 (-) True CI01000030_07072355_07077515
CI01000030_07008035_07011384.mRNA mRNA downstream 140831 7007833 ~ 7011384 (-) True CI01000030_07008035_07011384
CI01000030_07002565_07003644.mRNA mRNA downstream 148270 7002235 ~ 7003945 (-) True CI01000030_07002565_07003644
CI01000030_06985089_06988057.mRNA mRNA downstream 164111 6984257 ~ 6988104 (-) True CI01000030_06985089_06988057
CI01000030_07158026_07159540.mRNA mRNA upstream 2880 7157695 ~ 7159540 (-) True CI01000030_07158026_07159540
CI01000030_07166355_07167347.mRNA mRNA upstream 10381 7165196 ~ 7167347 (-) True CI01000030_07166355_07167347
CI01000030_07174087_07174921.mRNA mRNA upstream 18688 7173503 ~ 7175154 (-) True CI01000030_07174087_07174921
CI01000030_07249061_07250124.mRNA mRNA upstream 93511 7248326 ~ 7250175 (-) True CI01000030_07249061_07250124
CI01000030_07251323_07260721.mRNA mRNA upstream 96508 7251323 ~ 7260721 (-) True CI01000030_07251323_07260721
TU185332 other downstream 2071 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 226558 6924483 ~ 6925657 (-) True G163065
TU183403 other downstream 399804 6743298 ~ 6745350 (-) True G161515
TU183401 other downstream 399899 6743258 ~ 6745350 (-) False G161515
TU185612 other upstream 580621 7737975 ~ 7738004 (-) True G163364
TU185614 other upstream 633982 7792243 ~ 7792382 (-) True G163366
TU185749 other upstream 1037104 8192404 ~ 8192486 (-) True G163498
TU186160 other upstream 1778598 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 2132391 9287206 ~ 9302149 (-) True G163710

Expression Profile