G163161


Basic Information

Item Value
gene id G163161
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7181674 ~ 7183072 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU185366
TCAAGGGCTGTAAAACACGACAGAGATTTCACAAAAGATTTTTACTGTATAGAAGTGAAAGGCCACGTCCATGTGTTCAAGACAGGCGCTTACTGTAATTACGATGCCAATTTTGCTATTAACGTGTATCAGTACCAGGATGACTTCAGTTTTGACCAATCAGGGTTAAACGTTCTGATGCCACTGACGTCAGAGAAAGGCTCCTGCAATAAAGGGGCCGACAAGATGTGATGTCACAGAAAACAGCAGGAAACAGTAAAAGGCTGTGGGTCATTTTTAGCCTGTTTACAACAATTCTCGGAAATAGATCTTTAAATTTGTGGCACAATTAAACTGTGGCAGTGATTTGGAAAAAAATATTACAAAATAACAAAATATCTTATATTTGCGACTTAGAAAGCTGGAGGAAACTTCAAAGTATGTTTTCTTCCGTATCGGCGGATCTTCAGAAATCATTTAACAGCAGACAACAAGGGTTTAAAAGCCTGTTAAAAGCTCAACAAATATCATAGTGTCTTCTTTATTGACTGCGCTCAGGTGGAACTGTCTCATCTGCCACAAAGCGGACTTCCTCTGCAAACAAATACACACACACTCACTTAAATTCGATCCTGCCTAATGCAGCATGGGCCGCGGCGCATTAAAACATCCTCTTACAGGTGTGGCACGTACAAAATTGTGTCGCTTTTAACAGGTGATGTGCGTTAACGACATTCTAGCAGCATCAGAACGATGTCACAACGCTTTGTGTCCAGTAATGACTTATTAAAAAAAAAAAAAAACATAATTATTCCGTGACACAATAATGAATCATAGCACTTACGAGTCTCCAAGAGCACAGTTATACTTCGGAAACATAAAAGACACCTGCAATTGCAGAGTTGCAAATCTTTTAAAAATTCTCACATTATTGAATAGTTTGAAATATCCCAGAGCCTATAGACTGGGAAAGTCTTTTCTGGAGTTTTTGATTCACTTGACAGGATGGAGGTTATCTGTTATAAAGCTGGAAACATGTTTATCCAAGATAAGGGTCAGTTTGGTGATAAGTATCTGGGGTTTAATGCATCAAAAGTGTAGCTAACATAAAACTAGGTTTGGCCTTCTACGTCCTAAACCATCATAACAAATTACTGTTAAAATTACAAATTACTTGGGTTTGAATATTCACAAACATTATTTTAATAAATGTTTGCATGGTATTTGTTTAAGCATCAGATGAAATTTTAGGATTAATTTATGCAGAAAACCATAATTAAACAGACTTCTTCCTGCAACTGTTTTTGATTTATTTAATATTATT
>TU185368
ATGAAACCACATTCATTTTTTTATAACAAAAGAATTCAAGATAATATAACATATAAGATAACAAGATTACTAAGGGCAATGTACTCTTTTCCACTGTCAAGGGCTGTAAAACACGACAGAGATTTCACAAAAGATTTTTACTGTATAGAAGTGAAAGGCCACGTCCATGTGTTCAAGACAGGCGCTTACTGTAATTACGATGCCAATTTTGCTATTAACGTGTATCAGTACCAGGATGACTTCAGTTTTGACCAATCAGGGTTAAACGTTCTGATGCCACTGACGTCAGAGAAAGGCTCCTGCAATAAAGGGGCCGACAAGATGTGATGTCACAGAAAACAGCAGGAAACAGTAAAAGGCTGTGGGTCATTTTTAGCCTGTTTACAACAATTCTCGGAAATAGATCTTTAAATTTGTGGCACAATTAAACTGTGGCAGTGATTTGGAAAAAAATATTACAAAATAACAAAATATCTTATATTTGCGACTTAGAAAGCTGGAGGAAACTTCAAAGTATGTTTTCTTCCGTATCGGCGGATCTTCAGAAATCATTTAACAGCAGACAACAAGGGTTTAAAAGCCTGTTAAAAGCTCAACAAATATCATAGTGTCTTCTTTATTGACTGCGCTCAGGTGGAACTGTCTCATCTGCCACAAAGCGGACTTCCTCTGCAAACAAATACACACACACTCACTTAAATTCGATCCTGCCTAATGCAGCATGGGCCGCGGCGCATTAAAACATCCTCTTACAGGTGTGGCACGTACAAAATTGTGTCGCTTTTAACAGGTGATGTGCGTTAACGACATTCTAGCAGCATCAGAACGATGTCACAACGCTTTGTGTCCAGTAATGACTTATTAAAAAAAAAAAAAAACATAATTATTCCGTGACACAATAATGAATCATAGCACTTACGAGTCTCCAAGAGCACAGTTATACTTCGGAAACATAAAAGACACCTGCAATTGCAGAGTTGCAAATCTTTTAAAAATTCTCACATTATTGAATAGTTTGAAATATCCCAGAGCCTATAGACTGGGAAAGTCTTTTCTGGAGTTTTTGATTCACTTGACAGGATGGAGGTTATCTGTTATAAAGCTGGAAACATGTTTATCCAAGATAAGGGTCAGTTTGGTGATAAGTATCTGGGGTTTAATGCATCAAAAGTGTAGCTAACATAAAACTAGGTTTGGCCTTCTACGTCCTAAACCATCATAACAAATTACTGTTAAAATTACAAATTACTTGGGTTTGAATATTCACAAACATTATTTTAATAAATGTTTGCATGGTATTTGTTTAAGCATCAGATGAAATTTTAGGATTAATTTATGCAGAAAACCATAATTAAACAGACTTCTTCCTGCAACTGTTTTTGATTTATTTAATATTATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU185366 False 1303 lncRNA 0.37 1 7181674 7182976
TU185368 True 1399 lncRNA 0.36 1 7181674 7183072

Neighbor

gene id symbol gene type direction distance location
CI01000030_07174087_07174921 NA coding downstream 6520 7173503 ~ 7175154 (-)
CI01000030_07166355_07167347 NA coding downstream 14327 7165196 ~ 7167347 (-)
CI01000030_07158026_07159540 NA coding downstream 22134 7157695 ~ 7159540 (-)
CI01000030_07154555_07155973 NA coding downstream 25701 7154555 ~ 7155973 (-)
CI01000030_07118097_07122890 KRT97, KRT96 coding downstream 58694 7118097 ~ 7122980 (-)
CI01000030_07249061_07250124 NPB coding upstream 65254 7248326 ~ 7250175 (-)
CI01000030_07251323_07260721 SPHM, SGSH coding upstream 68251 7251323 ~ 7260721 (-)
CI01000030_07274776_07276578 NA coding upstream 91070 7274142 ~ 7276845 (-)
CI01000030_07438282_07471671 BCOR coding upstream 254142 7437214 ~ 7473797 (-)
CI01000030_07494612_07513546 NA coding upstream 310488 7493560 ~ 7514178 (-)
G163147 NA non-coding downstream 43100 7132655 ~ 7138574 (-)
G163146 NA non-coding downstream 50184 7131115 ~ 7131490 (-)
G163118 NA non-coding downstream 97096 7067348 ~ 7084578 (-)
G163108 NA non-coding downstream 143462 7037748 ~ 7038212 (-)
G163177 NA non-coding upstream 40919 7223991 ~ 7306353 (-)
G163240 NA non-coding upstream 128201 7311273 ~ 7311507 (-)
G163242 NA non-coding upstream 136195 7319267 ~ 7319998 (-)
G163195 NA non-coding upstream 153578 7336650 ~ 7337076 (-)
G163201 NA non-coding upstream 154381 7337453 ~ 7341617 (-)
G163139 NA other downstream 31530 7149474 ~ 7150144 (-)
G163065 NA other downstream 256017 6924483 ~ 6925657 (-)
CI01000030_06747047_06752255 NA other downstream 429263 6746960 ~ 6752411 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other downstream 476929 6701055 ~ 6704745 (-)
CI01000030_06131710_06138371 NA other downstream 1043268 6131090 ~ 6138406 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other upstream 552364 7735436 ~ 7737720 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other upstream 605725 7788797 ~ 7792198 (-)
CI01000030_08185866_08194632 NA other upstream 1008847 8184897 ~ 8197266 (-)
G163873 NA other upstream 1750341 8933413 ~ 8933982 (-)
CI01000030_09277337_09294501 NA other upstream 2104134 9276431 ~ 9294802 (-)

Expression


Co-expression Network