CI01000030_03847350_03849167 (LINGO3A, LINGO3)


Basic Information

Item Value
gene id CI01000030_03847350_03849167
gene name LINGO3A, LINGO3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3846996 ~ 3849441 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03847350_03849167.mRNA
ACTAACTTGACTGCAAGATTGTTTATCTTTACTGGTCTGAAAATGTGTTGCATCTAGCACCACTTTGGCCTACGTTTATGGACAACTTTAGAAATAGTTATACATGCTGAAACATAAATGTTGGTGAGTAATGGATTGGCTTATTTTATGGTGCTGTAGAAGTGGTTATAGCTGAGAGTTGAAAAAGCCATGATTAATCAATACCTGTTTTTTTGTGTTCTTGTCTCTAGGTGTGAGGTGCAGTGATTCAGCCCCTGTAAGGTAGGGAAGGGGCATGGCGGGTTGTCCATGCCTGAGCTTACCGGGGCTGCTTGTGCTCCTAATCGCTGCATCCATAACACATGGTCAGAGCTGCCCACAGCGCTGTGACTGTATCTCTCATCAGAGAGCTGTGATGTGCCAGAACAAGCGCCTGGGATCTATTCCTGCGGGCATCCCGGCTGACACACGGCTGCTGGATCTGAGTTGTAACAGTTTGCGCTGGGTGGAATACAATGAATTGGCGACTCTCTCGAGACTTGAGGAGCTAGACTTGAGTGAAAATCTCATCAGTGTATTGGAGCCTAACGCCTTCTCCAGCTTGCTTAATCTTAGAGTGTTGCGTCTGCGAGCCAACCAGCTTAAACTTGTGCCCATGGGTGCCTTTTCTCGTCTCACCAACCTCACCACCCTGGACCTAAGTGGGAATAAACTGGTCATCCTGTTAGACTTCACCTTCCAGGACTTGAAGAACCTCCGCAATTTGGAAGTTGGTGATAATGACCTGGTGTACATTTCAAACAAGGCTTTCCTGGGATTGGTGGGACTTCGGGAGCTAACCATCGAGAGGTGCAATCTGACTTCTATAACTGGACAGTCTCTTTCCTACCTTCGAGGCTTGGTGACTCTTCGATTACGCTACCTCAGTATAGCTTCGTTGGAAGAGCAGAACTTTCGCAAACTGGGTGGACTGCGGGGTCTTGAGATTGACCATTGGCCCTTCCTTGAGTACATTTCTCCGCACAGCTTCCAAGGCCTCAACCTTTCTTGGCTCTCAATTACCAACACCAATATTTCCACCGTGCCTACGGGTGCTCTTCGCAACCTAATTCACTTGGCTAGCCTCAATCTGTCTTACAACCCCATCTCGGTTCTCGAGTCCTGGGCCTTGCGGGACCTTGTCCGCTTGAAAGAACTGCACCTAGTTGGTACCAACCTGATATCAGTGCAGCCATATGGTCTTGGAGGCCTGCAACAGATACGATTGCTCAACTTGTCAAACAATGGGTTGGTGACCTTGGAGGAGGGATCCTTCCACTCGGTCAATACGCTGGAGACATTGCGTGTAGATGGCAACCCTTTGTCCTGTGACTGCCGCCTACTGTGGATCCTGCAGCGTCGTAAGACCCTCAACTTCAACGGAAAGTCACCCGTTTGCGCCACACCTTTGGAAGTGCGAGGAAAAGCACTTAGTACCTTTTCGGACTCTGCGCTCTTTGACCATTTCACCTGTCAGAGGCCCAAAATTCGTAACCGCAAGCTGCAGCAGCTGACGGCACGTGAAGGCCAGGTAGTGTCCTTTATATGTAGAGCGGAAGGAGACCCAACTCCAGTCATCTTTTGGATTTCACCTCAACGCCGACGTATCACCACCAAGAGTACTGGGAGAGTCATTGTCCTCCCTGAAGGTACGTTGGAGATCCGTTATGCCCAAGTAACAGACAGCGGCACTTACATCTGCATAGCAAGCAATGCTGGTGGCAACGATACCTACTTTGCCACCCTCACAGTCAGTGGATTGCCACTGGATGGTGCTTTGGCAGCAAATCGCACCTACTACGTGGGTGATCTTAATGACACTAACTTAAATGACACGCGTGTCTTCCTGAAGTTCACATTGGACCTCAAGACCATCCTGGTGTCCACAGCAATGGGTTGTATTATGTTTTTGGGTGTGGTGCTTTTCTGTTTCATTCTCTTGTTTGTGTGGAGCCGAGGACGAGGACAACACAAGAACAATTTCTCAGTAGAGTATTCATTCAGAAAGGTAGATGGACCTGCTGCCAGCGGGGGTCAAGGAGGAGCACGAAAGTTTAACATGAAGATGATATAAAATGGACTCACTGTTTAAAGGGGTAAAGCGCACATTATTGTTATTTTGAACTCAAATATATTTCAAATACCAGTCCTGCATATAGCTATAGGTCAGATTTTAAGACACAGAGGGTTTTAATGGGAGTAATGTAGTTACTAAGAGGTACTTTCCATCAGCAGTTATTTATAATTTAACCTTACTTTTGGTGTCTTGGGACATTTTACACAATCAAGACATTTATAATGAATTACATCTGTGGGGCTGGCTGGCATTAGGTACCCATTTTGAACTTTCCCATGTGAGAAGGCCAAGCCGGTAGTGATGCATAATGACTATTAAAAAATATTACCATGTAATTTCCTACAGAATAAA

Function

symbol description
lingo3a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in basal plate midbrain region; brain; otic vesicle; peripheral olfactory organ; and somite. Orthologous to human LINGO3 (leucine rich repeat and Ig domain containing 3).
lingo3 Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03847350_03849167.mRNA True 2446 mRNA 0.47 1 3846996 3849441

Neighbor

gene id symbol gene type direction distance location
CI01000030_03785020_03812002 ATP8B3 coding downstream 34213 3784688 ~ 3812783 (-)
CI01000030_03730577_03740244 PIAS4, PIAS4A coding downstream 106752 3729814 ~ 3740244 (-)
CI01000030_03719059_03726730 MAP2K2B, MAP2K2, MAP2K2A, MP2K2, TMEK coding downstream 119541 3718535 ~ 3727455 (-)
CI01000030_03713071_03713513 NA coding downstream 133209 3712625 ~ 3713787 (-)
CI01000030_03706598_03708425 ZBTB7A coding downstream 138263 3706341 ~ 3708733 (-)
CI01000030_03881956_03885985 NA coding upstream 32137 3881578 ~ 3886034 (-)
CI01000030_03906284_03908070 NA coding upstream 56658 3906099 ~ 3908772 (-)
CI01000030_03919724_03924153 OAZ1A coding upstream 70212 3919653 ~ 3924153 (-)
CI01000030_03927287_03932124 NA coding upstream 77786 3927227 ~ 3932164 (-)
CI01000030_03943397_03953732 NA coding upstream 93267 3942708 ~ 3954033 (-)
G160333 NA non-coding downstream 35641 3811090 ~ 3811355 (-)
G160332 NA non-coding downstream 36769 3809924 ~ 3810227 (-)
G160331 NA non-coding downstream 37242 3809424 ~ 3809754 (-)
G160263 NA non-coding downstream 188276 3657035 ~ 3658720 (-)
G160298 NA non-coding downstream 269414 3577378 ~ 3577582 (-)
G160351 NA non-coding upstream 120352 3969793 ~ 3970072 (-)
CI01000030_04012150_04013791 NA non-coding upstream 158888 4010930 ~ 4015095 (-)
G160361 NA non-coding upstream 248824 4098265 ~ 4099115 (-)
G160376 NA non-coding upstream 265306 4114747 ~ 4114974 (-)
G160381 NA non-coding upstream 269487 4118928 ~ 4119136 (-)
CI01000030_03491770_03493119 CELF5A other downstream 353896 3490119 ~ 3493741 (-)
G160213 NA other downstream 377834 3466353 ~ 3469162 (-)
G158980 NA other downstream 1314432 2499584 ~ 2536375 (-)
G158914 NA other downstream 1395278 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 1687705 2155584 ~ 2157390 (-)
G160713 NA other upstream 1569678 5419119 ~ 5423513 (-)
G160712 NA other upstream 1607519 5456960 ~ 5512074 (-)
G160949 NA other upstream 1947856 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 2283934 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 2851614 6701055 ~ 6704745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021108 lingo3a coding NC_007133.7 CM002906.2 20573862 ~ 20575679 (-)