RNA id: TCONS_00042398


Basic Information

Item Value
RNA id TCONS_00042398
length 3109
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_021124
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21544210 ~ 21547893 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATCACATACGATGTGTATCATTAActaagacaacatttgttttcaaatttttattattatttacaaaatataataacaGGGACAATAAATCATCATAACAGGAGCAATAATACATAAATTGCTTTAAAAGGGTAAAGTAAGTCAAAGCAGTGTTTGTCTCCCTTTCGTATCTTCTGAACCTTGTGTAAACTACACACAAAACTTAAAGCCGACTAAACAATTAGCAAACACACTGATCTGAGCGATTAATGTGaccaggatgatgatgatgatgatatgtGATGCTTTACAAAAAGTCAAGTCACAAAAGAGGCACTACGCTAGATTTGGCAGTGCCAGTTTCTCCAAACAGTGAAGAAAGATTCTGGGTTCTGACAAGTTGTGGCTTCAcgcaaatgaattggcagcaaaACCTGAGAAACTTAACCACTAATATCAGGATGACATTTATTGGCATAAACCATTCAAAAACCCTCTTCAACACTTAGTACTGAAGTACTGACGGACTAGACCGAGAGGGAAACGATCAAAGCCCCTGAGGAACttgtacttttttctttctttttgtgtttATTGCACAGAGAAGTTTTCTACAATGGGAAAGCTCGAACCTCATAACAGGTATCGCAACAAACGACAGCACAACATGACTGCATTAGTAGTTCATTCCTGATGATACGAGTAAAACCTTTTATTCTTTGAAAAAAataaggcatttaaaaaaaaaaaagagttgagtTTAAATGTGCTACATGCAATGAAAGAAACTATTTACTGTACAGGAACAACTATTATCAAACAGGTACCAAAACTATCCTTATTGAGACCATCGAACATCCCAGCAGGATTTAAGTCCTTGCATATTTCCAAAGCCTAAAATTAGGTAGTTAACACTTTCATTGCATGTAGTAATCTGACAGAGACAGTCAGTTCCCTAAAACACCCATTCAGATGAGTAGGTGaaaactacatggagtaaatgaCATGAATAACTTTTGAACACATTCCTTGAGATcaataacacacaaaacaaattaatcaaaGACGTTTTTACCTCATTTTGTTTCAAACCTGAAGGACTTTCTGAAAGTCAGTGAGGTCCAAAAGCTTCCTTTTACTATTAAAGTACATTGGTGTTAAAACGTGAGCACCATAAAGGTAGCAGAAAAGTAATCCATATGCTGCCAAATATAAGCCATTACTATTAAGGTCAATGGACCCAAAGGTTTTTCTTTTCCATTGCACTTCAGTGGGGTCCAAAGCTCTAGTATGGTAGTACATTTTTTGTAGAGTGTGGATTACTTTATGCTATCTTTTTCTAATTGTTAGAGCTTAAACGTTTTGGACCTCGTTCACTTCCATTGAATGGACAAAAATCTGCTAATACAAGtcaacaggtttgaaacaacacAAGGGTGATTTAATGTGTTTGACTGAACTATCTCTCAGGCTTTTCTGCAATTTCCAGGTGAGCAGCAGTTGTCACGTTTTCTTAGTTTAGTTAAAAACAACCAGATTTGAATGtggagaaacatttaaaacatttaaaagatttaaGGGATAATCAAAACAAACGTAAATCAAAAAAGCAGAATTATTTCATTCCAAACCTGAAAACTGACGAGGTCCGAAAGTGTCTTTTTATACTAAAAATCAGGGGGTCCAaaaggttatttaaaaaaaattaagttaataatgtctaaaagtttctttaaaaaagaaGGTTTCATAAACATAAAGGTAGCATAAAAGTAATTCATATGCAGCCAAATATTTGCCattactattaaagtcaatggacccaaagctttttattttacATTGCACTTCAGTGGGGTCCACTAAAATTTCCAGGTGAGCAGCAGTTGTCACGTTTTCTTAGTTTAGTTGAAAACAACCAGCTCTGAATgcggaaaaacatttaaaagattcCTGGAACAAAGAAATATAAATCAAAAAAGCAGAATTATTTCATTCCAAACCTGAAAACTGACGGGGtccaaaagtctttttttttttttactaaaaatcaACGTGGTCTTAAAgattcttttaaaaatgaaaatgtatgctaGCATTTTGGACTCTGATGACTTTTATTGTACGGAAAAAATATGGTTTGGGTTTTGTCAAAACATCTCATTAAATTCAGGTTTTACTGAAGAGCAACACGTGCAATTTCAGAGGAAACAACAGCAGTCACATTCCTTTAGTTTTGTTGTTGAAGACAACATGGATTTTGACGTCATGAGGAAATGCTGATGACACTCTTTGATTGAAAAGATAGCCAACACAAAAACTTTAAGTATTTACTATTTCATTCCAAACCAGTATGACTTTCTGAATGTTAATGGAGTCCAAACACTTCTAATGAAATTCGATGGGGTCCAAAAGTTTCTTTTAGAATTAAAGTCATCGGGGTCCACAATGTGTTCTGAAATTTTTACAGCACAAAAACTTGTAAGTAATCCATATGCTGCCAAATGTATGCTATCTTAATGTAATTTAATCTTTAGCATTATggaccccattgacttctattgtacaCACACAAtagtagtttaaaaaatatatttcgtGTACCTCAGAAAGAAGTCAAACTTTGGAGTATTATGAAGCTGATTAAATGATGACCAAAGATGCTGAAAACTCCTGAAGAGTGAACATTTTTCTTTTCCAAGTGAACGACAGTCGTCACTTTTCCTTAGATGTGGAATGTTTTTCCTTCATTGTTGTGTCGAGCAGATGGAGGAAGATGGACTACTAATCACACCAAAGTCTAGGACGGATGGTGAGGAAGGTAAAGAAAAGTCAAACTGAAGCTTCGGTGAAGCAACACACTCTGAGCAGGAAGGTGCAGGATCGTCAGCAAAAGACCCGAGTTGAAGCTTGTAAAACCCTGCTCCCAGGAGCCCTGAGTCAGGTGGGATGATGGGACGGAGTGTCTTCGGGAGATTTGGGAGAAGTAAAGCTGGGTGGATAGGGAGACCACGTCTGGCATCTGGAGCACTGGAGGAAGAGTAAACTGGCTGAACAACTGCTCCCCCTGTGGGCCAGAGCAACAACCTGCACACAGGTCAATCTCCCCAATGTTTCGCTCACAAGctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042396 lncRNA downstream 423114 21119896 ~ 21121096 (-) True XLOC_021118
TCONS_00041468 lncRNA downstream 828182 20715057 ~ 20716028 (-) True XLOC_021110
TCONS_00042395 lncRNA downstream 996670 20522204 ~ 20547540 (-) True XLOC_021107
TCONS_00042394 lncRNA downstream 1906181 19622740 ~ 19638029 (-) True XLOC_021094
TCONS_00042393 lncRNA downstream 1941748 19598045 ~ 19602462 (-) True XLOC_021093
TCONS_00041492 lncRNA upstream 128223 21676116 ~ 21677168 (-) False XLOC_021125
TCONS_00042399 lncRNA upstream 402809 21950702 ~ 21954981 (-) False XLOC_021129
TCONS_00042400 lncRNA upstream 402809 21950702 ~ 21955166 (-) True XLOC_021129
TCONS_00042402 lncRNA upstream 472616 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00042401 lncRNA upstream 472616 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00041489 mRNA downstream 67374 21475648 ~ 21476836 (-) True XLOC_021123
TCONS_00041487 mRNA downstream 151462 21359164 ~ 21392748 (-) False XLOC_021122
TCONS_00041488 mRNA downstream 155756 21385391 ~ 21388454 (-) True XLOC_021122
TCONS_00041486 mRNA downstream 229350 21313332 ~ 21314860 (-) True XLOC_021121
TCONS_00041485 mRNA downstream 229389 21313332 ~ 21314821 (-) False XLOC_021121
TCONS_00041490 mRNA upstream 124763 21672656 ~ 21676364 (-) False XLOC_021125
TCONS_00041491 mRNA upstream 124763 21672656 ~ 21755524 (-) False XLOC_021125
TCONS_00041493 mRNA upstream 146110 21694003 ~ 21755966 (-) True XLOC_021125
TCONS_00041494 mRNA upstream 246144 21794037 ~ 21845685 (-) True XLOC_021126
TCONS_00041495 mRNA upstream 304177 21852070 ~ 21897279 (-) False XLOC_021127
TCONS_00041483 other downstream 368066 21167096 ~ 21176144 (-) False XLOC_021120
TCONS_00041481 other downstream 425194 21118902 ~ 21119016 (-) True XLOC_021117
TCONS_00041464 other downstream 1053653 20490441 ~ 20490557 (-) True XLOC_021106
TCONS_00041451 other downstream 1282311 20256767 ~ 20261899 (-) True XLOC_021099
TCONS_00041449 other downstream 1377627 20165683 ~ 20166583 (-) True XLOC_021098
TCONS_00041498 other upstream 385232 21933125 ~ 21937488 (-) True XLOC_021128
TCONS_00041511 other upstream 985693 22533586 ~ 22534463 (-) True XLOC_021139
TCONS_00041513 other upstream 1277897 22825790 ~ 22825878 (-) False XLOC_021142
TCONS_00041514 other upstream 1396568 22944461 ~ 22944585 (-) True XLOC_021143
TCONS_00041524 other upstream 1948922 23496815 ~ 23496929 (-) True XLOC_021149

Expression Profile

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