RNA id: TCONS_00041491


Basic Information

Item Value
RNA id TCONS_00041491
length 2848
RNA type mRNA
GC content 0.54
exon number 20
gene id XLOC_021125
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21672656 ~ 21755966 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGCTGCTGAAAAGCCTGCTGGATCTTCCAGTGACCTGCTGTTCTTTCCTGCTttcctgtgtgttttttttttcttcttctctagaTTTAGATTAAAAACAAAGCCCGGTCCTCCTTCTCCCTTGTCTTTTTAGACCTCTGCAAAGAAGCCCTGTAGTTTTGAGGTACTGTTACAAGGTTGGAAGATTCGAATGGAGATACGTGTTTGTTTTTGTAGCTTGTTGGGGACATTTGCAGAAGGACAAGTCTAAGGAGAGCTGGACGTGATTCTTCGGAATTCCCTGCTTCTCCCATTCTCCTGATCTGTCGGACAGTAACAAAGTGGGACGTCAGGGAATTCTCGGGGGAAATCCAGTCCAAGTGTGAAGTAAGGGGATCTGTTTTTGGAGGACTCCTTGTCGGATGCACTGACTGTCTTCTGCGGCTCCGAAAGGACAGAGCCGGGTTCCCGAGCTCAATCCGGGGCTCAGTCCCCTGGTAGAGGGGGAACGCAAGAGTACGGAGGGTCAGTGCATTGCCCGTCAAACCGGCATCCCTCCGTTGACCATGTACCCACAGGGTAGACACCCGGTACCTCTGCAGCCTGGACAGTCATTTAAGTTTACAGTTCTGGAGACCCTGGACCGCATTAAAGAGGAGTTTCAGTTCCTTCAGGCTCAGTACCACAGTCTCAAGTTGGAGTGTGAGAAGTTGGCCAGTGAGAAAACTGAGATGCAGCGCCACTATATCATGTACTACGAGATGTCCTACGGGCTCAACATTGAGATGCACAAACAGGCGGAGATCGTGAAGCGACTCAGTGCTATCTGTGCTCAAATCATCCCTTTCCTCTCTCAGGAGcaTCAACAGCAGGTTGTTCAGGCGGTGGAGCGAGCTAAACAAGTGACCATGGCAGAGCTCAACGCCATCATAGGGcagcagcagctccagcaCCTGTCTCACCACACTCCAGGTATTCCTCTCACTCCTCATCCTTCAGGTCTGTCTCTGGGTGGGACGTCCAGTCTGTTGGCCCTCACTGGGGCCCTGGGAGTCACGGCACACCTGGCCAACAAGGACGAACGCAACCACCTAGACCCAGAGCACCTACGAGAGGGTGCGCCCAGCAGGAGTAAATCAGTGTCGTCGACTGACAGTCAGGCGGTGGAGGATCGTCAGGGTCCGTCAGGGGTTTATTCCTCTCAGGCCGGTGGTGATGCCAAACGGAGACGCTGTGAGGAAAAAGACATTCTGCAGTCCCACTACGACAGTGATGGAGACAAGAGCGAGGACAATCTTGTAGTAGACGTCTCGAATGAGGAAGCTTCCTCTCCGGTCGGCAGTGCTCCTCTCTCTCCTCATGGAAATGGACTGGATCGAGCTCTACCACTGAGGAAAGAGCTCCCAGGATCCCCCAGTCCCCCCACAGCCTCCCCGCCACACAGCCCAACCCCTGGCAAAAACAAGGACACGACAGAAAAATCTCAGTCGCCTTCCTCAAAATCAGGCAATTCCTCTCCCTCTCACCATGACCCTCTCACCCCTGGTCCACCCGGCCCACCGGGACCCAGCACGTCCTGTTTACGCCTGGTCAACAAACCTGCCTCCTCGGCAGACCCTCTGGCTCTGCGGAGCCCCTTAACCATGACGCCCGGTTCTTACCCAGCTCACTTTGGGGTGGTGTCTCACGCTGGGCTGAATGGAGAGCTGGCCAGTCCGGGCGGATTCGGAGGCTCACTCACCCTCTCGCCCCAAATCAGTGCTGCAGCCAGTGCCTACACACGCAGCCCTATGTTCTTCCTTTCACAGGTAGCGTATGAATCCCGTTCACATCTCAGGCCCTCAGGGCTGTCCTCCTCACTTCCTGGCTCTACTAGTGGCAAACCTGCTTACTCGTTCCATGTGAGCGCAGATGGTCAAATGCAGCCGGTGCCCTTTCCTCCTGATGCCCTCCTCGGCCCTGGCATCCCGCGTCATGCCCGTCAGATCCACACTCTGAGTCATGGAGAGGTGGTGTGCGCCGTCACCATCAGCACTTCCACACGCCACGTCTACACCGGTGGCAAAGGTTGTGTCAAAGTATGGGACATCAGCCAACCAGGCAGCAAGAGCCCGATGGCCCAACTGGACTGTTTGAATCGAGACAACTACATCCGCTCATGCAAGATTCTCCCAGATGGCCGGACCTTAATAGTTGGGGGCGAGGCCAGCACACTGTCCATCTGGGACTTGGCCACACCCACTCCACGCATCAAGGCAGAATTGACGTCTTCGGCTCCGGCCTGCTACGCTCTGGCCATCAGTCCTGACAACAAGGTCTGCTTCTCCTGCTGCAGTGACGGAAACATCGTAGTCTGGGACCTGCACAACCAGACACTCGTCAGGCAGTTCCAAGGCCACACAGATGGAGCCAGTTGTATTGATATTTCTAATGATGGGACCAAATTGTGGACGGGAGGTCTGGACAACACTGTACGCTGCTGGGACCTGAGAGAAGGGCGACAGCTGCAGCAGCATGACTTCACATCACAGATCTTTTCTCTGGGTTACTGTCCTACGGGTGAATGGCTTGCAGTGGGGATGGAGAGCAGTAATGTGGAAGTGCTGCACGTCTCCAAACCAGACAAATACCAGCTACACCTTCATGAAAGCTGCGTTCTCTCGCTCAAGTTTGCCTACTGCGGGAAGTGGTTTGTAAGCACAGGAAAGGACAATCTTCTCAATGCATGGAGGACGCCTTACGGAGCCAGTATTTTCCAGtcaaAGGAGACCTCATCTGTCCTGAGCTGTGACGTGTCTCCAGATGACAAGTATATTGTAACTGGATCTGGGGACAAGAAAGCCACGGTGTATGAGGTGGTGTACTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0070491 repressing transcription factor binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-677 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE2 (TLE family member 2, transcriptional corepressor).

Ensembl:

ensembl_id ENSDART00000149635

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042398 lncRNA downstream 124763 21544210 ~ 21547893 (-) True XLOC_021124
TCONS_00042397 lncRNA downstream 124800 21544210 ~ 21547856 (-) False XLOC_021124
TCONS_00042396 lncRNA downstream 551560 21119896 ~ 21121096 (-) True XLOC_021118
TCONS_00041468 lncRNA downstream 956628 20715057 ~ 20716028 (-) True XLOC_021110
TCONS_00042395 lncRNA downstream 1125116 20522204 ~ 20547540 (-) True XLOC_021107
TCONS_00042399 lncRNA upstream 195178 21950702 ~ 21954981 (-) False XLOC_021129
TCONS_00042400 lncRNA upstream 195178 21950702 ~ 21955166 (-) True XLOC_021129
TCONS_00042402 lncRNA upstream 264985 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00042401 lncRNA upstream 264985 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00041957 lncRNA upstream 294773 22050297 ~ 22074630 (-) False XLOC_021130
TCONS_00041489 mRNA downstream 195820 21475648 ~ 21476836 (-) True XLOC_021123
TCONS_00041487 mRNA downstream 279908 21359164 ~ 21392748 (-) False XLOC_021122
TCONS_00041488 mRNA downstream 284202 21385391 ~ 21388454 (-) True XLOC_021122
TCONS_00041486 mRNA downstream 357796 21313332 ~ 21314860 (-) True XLOC_021121
TCONS_00041485 mRNA downstream 357835 21313332 ~ 21314821 (-) False XLOC_021121
TCONS_00041494 mRNA upstream 38513 21794037 ~ 21845685 (-) True XLOC_021126
TCONS_00041495 mRNA upstream 96546 21852070 ~ 21897279 (-) False XLOC_021127
TCONS_00041496 mRNA upstream 96589 21852113 ~ 21897203 (-) False XLOC_021127
TCONS_00041497 mRNA upstream 96589 21852113 ~ 21897262 (-) True XLOC_021127
TCONS_00041499 mRNA upstream 373834 22129358 ~ 22130623 (-) True XLOC_021131
TCONS_00041483 other downstream 496512 21167096 ~ 21176144 (-) False XLOC_021120
TCONS_00041481 other downstream 553640 21118902 ~ 21119016 (-) True XLOC_021117
TCONS_00041464 other downstream 1182099 20490441 ~ 20490557 (-) True XLOC_021106
TCONS_00041451 other downstream 1410757 20256767 ~ 20261899 (-) True XLOC_021099
TCONS_00041449 other downstream 1506073 20165683 ~ 20166583 (-) True XLOC_021098
TCONS_00041498 other upstream 177601 21933125 ~ 21937488 (-) True XLOC_021128
TCONS_00041511 other upstream 778062 22533586 ~ 22534463 (-) True XLOC_021139
TCONS_00041513 other upstream 1070266 22825790 ~ 22825878 (-) False XLOC_021142
TCONS_00041514 other upstream 1188937 22944461 ~ 22944585 (-) True XLOC_021143
TCONS_00041524 other upstream 1741291 23496815 ~ 23496929 (-) True XLOC_021149

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_04406404_04415516.mRNA True 1968 mRNA 0.58 8 CI01000030 4405878 ~ 4415516 (-)
bowfin (Amia calva) AMCG00005834 True 2372 mRNA 0.64 18 CM030142.1 10721752 ~ 10736626 (+)