RNA id: TCONS_00041496


Basic Information

Item Value
RNA id TCONS_00041496
length 1203
RNA type mRNA
GC content 0.51
exon number 8
gene id XLOC_021127
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21852070 ~ 21897279 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACTCTGGAGTCCATGATGGCCTGTTGCATGAGTGAAGAGGCGAAGGAGTCCAAAAGAATCAACGCCGAGATCGACAAACAGCTCCGGAGAGACAAGCGAGATGCCAGGCGGGAGCTCAAACTCCTCTTGCTGGGCGAGAGCGGCAAGAGTACGTTCATCAAACAGATGCGCATCATTCACGGGACGGGCTACACCGACGAGGACAAGCGCGGTTACACCAAACTCGTCTACCAGAACATCTTCACCTCCATGCAGGCAATGATCCGCGCCACCGAGCACCTCAAGATCCCATTCAGATTCGAAGACAACAAGAAAAACGCTCTGCTGGTGCGAGAGGTCGATGTCGAGAAGGTTTGCTCTTTTGAACAGCCCTATGTTGCTGCAATTAATAAGCTCTGGATGGATCCGGGCATCCAGGAAGCATACGACCGCAGGCGAGAGTACCAGCTCTCTGACTCCACTAaataCTACCTTAACGATTTAGAGCGTATATCATCTCGGGGATACATGCCCACCCAGCAGGATGTACTGAGGGTCCGAGTGCCCACAACTGGCATCATAGAGTATCCCTTTGATCTGGAGAATATAATCTTCAGCTATCTAAGTGATTTGGAGCGTATCTCAGACCCGTCGTATCTGCCGACTCAGCAAGACGTGCTTAGGGTTCGCATCCCTACCACAGGGATTATCGAATATCCCTTCGACTTGCAAAGCATCATTTTCAGGATGGTGGACGTCGGAGGCCAGAGATCAGAGCGCAGGAAGTGGATTCACTGCTTTGAGAACGTCACATCTATCATGTTCCTGGTTGCCTTGAGCGAATACGACCAGGTCCTTGTGGAATCTGACAAcgagAATCGCATGGAGGAAAGCAAAGCGCTGTTTCGCACAATCATCACCTACCCCTGGTTCCAGAACTCCTCCGTCATTCTGTTCCTCAACAAGAAGGACCTTCTAGAGGAGAAGATCCTGTGCTCTCACCTGGTGGACTATTTCCCTGAATTTGATGGTCCACAAAATGACGCCCAGTCAGCCCGAGAGTTTATCCTGAAGATGTTCGTGGACCTGAACCCGGACAGCGACAAGATCATCTACTCGCACTTCACCTGTGCCACAGACACCGAAAACATCCGCTTCGTCTTCGCAGCGGTCAAGGACACCATCCTGCAGCACAACCTAAAAGAGTACAACCTAGTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0060158 phospholipase C-activating dopamine receptor signaling pathway biological_process
GO:0001508 action potential biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0031826 type 2A serotonin receptor binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-597 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in action potential; adenylate cyclase-modulating G protein-coupled receptor signaling pathway; and phospholipase C-activating dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in barbel; brain; gill; lip; and sensory system. Human ortholog(s) of this gene implicated in autosomal dominant hypocalcemia 2 and familial hypocalciuric hypercalcemia 2. Orthologous to human GNA11 (G protein subunit alpha 11).

Ensembl:

ensembl_id ENSDART00000158501

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041492 lncRNA downstream 174945 21676116 ~ 21677168 (-) False XLOC_021125
TCONS_00042398 lncRNA downstream 304220 21544210 ~ 21547893 (-) True XLOC_021124
TCONS_00042397 lncRNA downstream 304257 21544210 ~ 21547856 (-) False XLOC_021124
TCONS_00042396 lncRNA downstream 731017 21119896 ~ 21121096 (-) True XLOC_021118
TCONS_00041468 lncRNA downstream 1136085 20715057 ~ 20716028 (-) True XLOC_021110
TCONS_00042399 lncRNA upstream 53499 21950702 ~ 21954981 (-) False XLOC_021129
TCONS_00042400 lncRNA upstream 53499 21950702 ~ 21955166 (-) True XLOC_021129
TCONS_00042402 lncRNA upstream 123306 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00042401 lncRNA upstream 123306 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00041957 lncRNA upstream 153094 22050297 ~ 22074630 (-) False XLOC_021130
TCONS_00041494 mRNA downstream 6428 21794037 ~ 21845685 (-) True XLOC_021126
TCONS_00041493 mRNA downstream 96147 21694003 ~ 21755966 (-) True XLOC_021125
TCONS_00041491 mRNA downstream 96589 21672656 ~ 21755524 (-) False XLOC_021125
TCONS_00041490 mRNA downstream 175749 21672656 ~ 21676364 (-) False XLOC_021125
TCONS_00041489 mRNA downstream 375277 21475648 ~ 21476836 (-) True XLOC_021123
TCONS_00041499 mRNA upstream 232155 22129358 ~ 22130623 (-) True XLOC_021131
TCONS_00041500 mRNA upstream 243837 22141040 ~ 22147375 (-) False XLOC_021132
TCONS_00041501 mRNA upstream 243840 22141043 ~ 22164338 (-) True XLOC_021132
TCONS_00041502 mRNA upstream 275069 22172272 ~ 22231720 (-) True XLOC_021133
TCONS_00041503 mRNA upstream 337212 22234415 ~ 22242884 (-) False XLOC_021134
TCONS_00041483 other downstream 675969 21167096 ~ 21176144 (-) False XLOC_021120
TCONS_00041481 other downstream 733097 21118902 ~ 21119016 (-) True XLOC_021117
TCONS_00041464 other downstream 1361556 20490441 ~ 20490557 (-) True XLOC_021106
TCONS_00041451 other downstream 1590214 20256767 ~ 20261899 (-) True XLOC_021099
TCONS_00041449 other downstream 1685530 20165683 ~ 20166583 (-) True XLOC_021098
TCONS_00041498 other upstream 35922 21933125 ~ 21937488 (-) True XLOC_021128
TCONS_00041511 other upstream 636383 22533586 ~ 22534463 (-) True XLOC_021139
TCONS_00041513 other upstream 928587 22825790 ~ 22825878 (-) False XLOC_021142
TCONS_00041514 other upstream 1047258 22944461 ~ 22944585 (-) True XLOC_021143
TCONS_00041524 other upstream 1599612 23496815 ~ 23496929 (-) True XLOC_021149

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_04521454_04544414.mRNA True 1818 mRNA 0.49 9 CI01000030 4521423 ~ 4544881 (-)
bowfin (Amia calva) AMCG00005835 False 1314 mRNA 0.57 10 CM030142.1 10679937 ~ 10690305 (+)