XLOC_021133 (ap3d1)


Basic Information

Item Value
gene id XLOC_021133
gene name ap3d1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22172272 ~ 22231720 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041502
ATATAGCCCGTGTTCGCGGTTCGGTCCGGTCGGACAGGAGGGAAATCATCATGGCTCTGAAGATCGTGAAGGGAAGCATCGATCGGATGTTCGATAAAAACCTGCAGGATTTAGTACGTGGCATTAGGAACCATAAGGAAGATGAGGCCAAATACATCTCTACCTGCATCGATGAGATCAAACAAGAACTCAAACAGGACAACATCGCCGTTAAAGCCAACGCCGTCTGCAAGCTCACCTACTTGCAGATGCTCGGCTATGATGTGAGCTGGGCTGCTTTCAACATTGTGGAGGTCATGAGCTCCTCCAAATTCACTTATAAGCGAATTGGCTACCTTGCTGCGTCCCAATGCTTTCACGAGGGCACTGATGTCATCATGCTGACGACCAATCAGATCCGCAAGGATCTCAGCAGTCCAAACCAATATGACACCGGTGTGGCTCTGACTGGCCTCTCCTGCTTCGTGACCCCTGACCTCGCTCGTGACCTCGCCAATGACATCATGACTTTGATGTCGCACACCAAGCCGTACATTCGCAAGAAGGCCGTGCTGATCATGTACAAAGTGTTTCTGAAGTACCCAGAATCCCTGCGTCCTGCTTTTCCCCGACTCAAGGAGAAGCTGGAGGATCCTGATCCTGGTGTCCAGTCAGCGGCTGTGAACGTCATCTGTGAACTGGCTAGAAGAAATCCTAAGAACTACTTGTCGCTGGCGCCCCTGTTCTTCAAACTCATGACCTCCTCCACCAACAACTGGGTTCTCATCAAGATCATTAAGCTGTTTGGTGCTCTCACTCCTTTGGAGCCTCGTTTGGGAAAGAAGCTGATTGAGCCCCTGACAAACCTCATCCACAGTACCTCGGCCATGTCGCTTCTCTATGAGTGCGTCAACACAGTTATAGCAGTGCTGATCTCGCTGTCTTCTGGGATGCCCAATCACAGTGCAAGCATACAGCTCTGTGTGCAGAAACTGCGAATCCTGATTGAAGACTCGGACCAGAACTTGAAGTACTTGGGTCTTCTGGCCATGTCAAAGATCCTAAAGACGCACCCGAAGTCTGTGCAGTCACACAAAGACCTGATCCTGCAATGTTTGGATGACAAAGATGAGTCCATTCGCTTGAGAGCTCTGGATCTGCTCTACGGCATGGTCTCAAAGAAGAACTTGATGGAGATTGTGAAGAAGCTCATGCTGCATGTGGACAAAGCTGAAGGCACCACTTACAGAGATGAGTTGCTCACCAAGATCATCGACATCTGCAGCCAGAGCAACTACCAGTATATCACTAACTTCGAATGGTACATCAGTATCCTAGTAGAACTGACTCGTCTCGAGGGCACCAGGCACGGCCATCTAATCGCTTCTCAGATGCTGGATGTTGCCATTCGCGTCAAAGCCATCCGAGCCTTCGCTGTGGCTCAGATGGCCACTCTGCTGGACAACGCACACCTGCTGACTGGCAACACACAGCGCAACGGGATCTGCGAGGTTCTCTACGCCGCCGCATGgatctgtggggagtttgcagaGCATCTGGAGGACCCTATGCTGACACTAGAGGCCATGTTGAGACCCAAGGTGGCCACCCTGCCCGGTCACATCCAGGCGGTGTATGTGCAAAACGCTGCCAAGCTGTTTGCAACAGTGCTGCAGAAGCATGAAGGGGAGACGGACAGTCAGGCCGCTCAGGAGACCAGCCAGCTGCTTATCGACAGACTGCCGCTGTTTGTCCAGAGTGCCAACCTAGAAGTGCAAGAGAGGGCATCCTGCATCCTCCAGCTGGTGAAGTACATCCAGAAGCTGCAGCAGAAGAATGTGGAGGTGGCTGAGGAAGTGACGGCCCTCTTTGCTGGAGAGCTCAACCCTGTGGCCCCCAAGGCCCAGAAGAAAGTGCCTATACCAGAAGGTCTGGATTTGGATGCCTGGATCAATGAGCCTCCATCAGAGAGCGAATCAGAGGACGAGAAGCCCAAAGCGGTGTTCGCTAAAGAGGAGCCCAAGCATTCCAGATCGAGACACACTGAGGTGGATGAGAAAGAGCTGGCCAGGAGGAGGGAGGCAAGGAAGCAGGAACAGGCTAACAACCCGTTCTACATCAAGGCCTCGCCATCATCACAGAAGGTTTATGATGCGCCAGGAGTTGAACACATCCCAGTGGTGCAGATTGACCTTAGTGTGCCTCTCAAAGTCCCAGGGATGCCCATGTCTGACCAGTACGTCAAGCTGGAGGAGGAGCGCCGGCAGAAGGAGAAGGCCGAcaagaagaagaaggagaagaagaaaaagagggaAAAGCGAGGGAAAGGGAGGAAGGGGGATTCAGGTCCCGAGAGCGAGGAGGACATCACACCTGCTCACCATGTGGACATAGTCACAGAGGAAATGCCAGAGAATGCCTTACcaagtgatgatgatgataaagatcCCAATGACCCTCATAAAGCTCTGGACATCGATCTGGACAAgccaCTTGCAGACAGTGAGAAGCTTCCAGTGAGGACCCATCGTCCAGAGGTGCTGAAGAGCCCTGCGGAGGACAGAGACGACAACACTATCCCGCAGGagaccaagaagaagagcagCAAGGacaagaaggagaagaagaaagaCAAGGAGAAGGACAGAAAGAGGAGCAAAGAGgacaagaagaaaaagaagaagcacAAAGATGTGGAGGAGGAGCTTCCCGAGTCCCTGCCTGAAGAAGTCGTCCAATCAGAGGAGACCAAAGAGGTGGCAGTTCCGCCCACATCTGCTGATGCCTCGGATCTGGATTTCTGGCTCTCTAGCGCTCCTGTTCCCCCCGTGGCCCAGGTAGTGACGGTGTCCtcgtctgctgctgctgctactgtcGACTCGAGCTCTGCAGCTGCTGCAGAGTCTGAGCCTGAGGAGCTCAAAGACACTGAGCCAGATGACACTAAATCATCTAAACacaagaagaagaagcagaagaaggaaaaggaggagaaggagaagaaaaagaagaagcgtcaccaccaccatcatcatcatcacagtgACGCCGGTGCGGAGGATTCAGTGCAGAATGGCACCGTAGAGGACGAGGAGCCGCTGCCGCCCATGTCCAActactctctgctggctgagaactcCTACATCAAGATGGTCTGTGACATTCAGGGCAACCATCAGGACGAGAGTAAAGTGGTGGTGTCGGTCATCTTCGAGAACAAGAGCGACAGCTTTCTTAAGTCCATGGAGTTCAATGTGCTGGATTCGCTCAACTCCAAACTGCAGCGGCCGGACGGAGCAGGACCCCACGACGGCCTCACCGTCCCCTTCCAGTTGCCGCCAGGGGTGTCAAATGAGGCCCGTTTCGTATTCTCGGTACAGAGTATCGTCATGCCGCAGAAACTGAAGGGAACCCTCACGTTTATAGTTAAGACGGATGAATCCTCCACTCACGAGAAACTGGACTTCAAACTGCACTTTACATGCACGTCATACCTGATCACCACTCCCTGCTACAGTGATGCATATGCAAAGCTGCTGGAGTCGGGCGACCTGAAGGGCAGCTCTCTGCGGCTCGAGGGGGTCAACATGCCCTTCCACCACCTGCTGGCCAGGATCTGCTTCCACCATCACTTCTCTGTTGTGGAGAGGATTGACTCCTGCGCCTCTATGTACAGCAGGTCCATCCAGGGTCACCACGTCTGTTTGCTGGTCAAAAGTTCTGATCAGACCGTCTCCATCGACGCCAAGTGCGACGAGCCATCGCTGCTGGGGAATGTGTTGGATGAGATCAAGCAGACCTTCTCGAAATGCTGACTGTGACCCGCGGCCCACAGCACCCCGAAAC

Function

symbol description
ap3d1 Predicted to be involved in several processes, including Golgi to vacuole transport; establishment of protein localization to vacuole; and synaptic vesicle transport. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of AP-3 adaptor complex. Predicted to be active in endosome membrane; presynaptic endosome; and terminal bouton. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome. Orthologous to human AP3D1 (adaptor related protein complex 3 subunit delta 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006896 Golgi to vacuole transport biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0048490 anterograde synaptic vesicle transport biological_process
GO:0048499 synaptic vesicle membrane organization biological_process
GO:0016182 synaptic vesicle budding from endosome biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome biological_process
GO:0015031 protein transport biological_process
GO:0030117 membrane coat cellular_component
GO:0030123 AP-3 adaptor complex cellular_component
GO:0098830 presynaptic endosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0043195 terminal bouton cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-437 Predicted to be involved in several processes, including Golgi to vacuole transport; establishment of protein localization to vacuole; and synaptic vesicle transport. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of AP-3 adaptor complex. Predicted to be active in endosome membrane; presynaptic endosome; and terminal bouton. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome. Orthologous to human AP3D1 (adaptor related protein complex 3 subunit delta 1).

Ensembl:

ensembl_id ENSDARG00000071424

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041502 True 3825 mRNA 0.53 33 22172272 22231720

Neighbor

gene id symbol gene type direction distance location
XLOC_021132 cdc34a coding downstream 7934 22141040 ~ 22164338 (-)
XLOC_021131 C2CD4C coding downstream 41649 22129358 ~ 22130623 (-)
XLOC_021130 NA coding downstream 46532 22020509 ~ 22125740 (-)
XLOC_021129 NA coding downstream 217106 21950702 ~ 21955166 (-)
XLOC_021128 BX649295.1 coding downstream 234784 21933125 ~ 21937488 (-)
XLOC_021134 hdgfl2 coding upstream 2695 22234415 ~ 22259175 (-)
XLOC_021135 chaf1a coding upstream 44563 22276283 ~ 22301929 (-)
XLOC_021136 si:ch211-129c21.1 coding upstream 85135 22316855 ~ 22340688 (-)
XLOC_021137 NA coding upstream 110665 22342385 ~ 22523455 (-)
XLOC_021138 camsap2a coding upstream 113416 22345136 ~ 22416337 (-)
XLOC_021124 NA non-coding downstream 624379 21544210 ~ 21547893 (-)
XLOC_021118 NA non-coding downstream 1051176 21119896 ~ 21121096 (-)
XLOC_021139 BX649292.1 non-coding upstream 301866 22533586 ~ 22534463 (-)
XLOC_021141 NA non-coding upstream 538802 22770522 ~ 22788728 (-)
XLOC_021142 NA non-coding upstream 593705 22825425 ~ 22861498 (-)
XLOC_021143 BX936380.2 non-coding upstream 712741 22944461 ~ 22944585 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_04662934_04688901 AP3D1 coding CI01000030 null 4662192 ~ 4688901 (-)
bowfin (Amia calva) AMCG00005849 LOC107676965 coding CM030142.1 CM030142.1 10355036 ~ 10370381 (-)