XLOC_021135 (chaf1a)


Basic Information

Item Value
gene id XLOC_021135
gene name chaf1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22276283 ~ 22301929 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041505
GGGAGCGCGAGGGAGTCTGGCCGGGGATGAGACGGGAACGCGGGGAGCAGGATCACAcacgaaaaaaacaacaaattaaaccTCCAAAAGTTACAGAAACCTGTCGAATTAGCGGTTGACAAGTTAACGTTACCCTGGAAAAGTCGTGGAGTCGATGAGTGGCCGTAAGAAGCTGTGTAAGACGTCCAAAATCGCGCTCCCCGTTTCCGTGTAAGATTTCCAGTGTGAGCGAGCGCACGGAGCCGAAGGGCGCGCGGATGGTGGTCGTGATGCTCGCGGCCGAAGAGCCTTTGGCCTCCACTCCACGCAGAGATATGGATTGTGTGGGCAAAGCTAATACCAACAAGAAGCTTGTTCAAGCACGTCTGCCTTTCAAAAGGCTCAACCCTGAACCCAAGGAATGCAATGAGCCCAAAAGAACCAAAGGTCCCGTTGCTCCCAAGTGTTCTGAACCCAGTGATCAGGAAAATGATCAGGACAGCTCCTCCATCTCGCACCATGGCCCGGCTCTGGTGAACGGCCGTGGTCCTCTTGATTGCTTCATGAGTCGGCGGAAGCGTTCCCCGCTCCGCTCAGCCCCTGAAGCCACTATCGACCTAACTGAAGACTCAAACGATTCTGCCAAACAGCAGCCGGCACCTCCTATCGCTGCCACCTGCCCTCTTAGTGAAGAGAAAACAAAGACCTCTGAAGGGTCCACCAGCTCCGCCTCTGTGATCGCGAGCTCACCAGAGCCCAGCAAAAGTGCTCCCACCACCCCTGCTTCTacATCACGGATAAATGCAGCTAATAAAGTGAAGAGACGATCCcttaagAGTGTTCAAGAGCAGGAGGAGAAGCAGCGACAGAGGGATGAGAAAGAACGGCTGAAACAGGAGGCCAAAGCTGCCAAGGAGAAGAAGAAAGAGGAGGCCCGCAAGATGAAGGAGGAGAAGGAGAgggagaaaaaagagaaaaaggagAAAGATGAAAAGGAGCGGCGGGAAAAAAAGGAGAGGGACGAAAAAGAAAAAGCAGAtaaattaaaagctaaagaagAGCAACGGCAGATGAAAATTGAggccaaactagaagagaaaaggaagaaagaagagGAAAAACGGTTAAAGGAAGAGAAAGATCGAATTAAAGCTGAGAAGGCTGAGATTACACGGTTTCTGCAAAAGCCCAAGACCCAGTTGGCACCAAAGACTCTGGCTTCTGCCTGCGGGAAGTTTGCTCCGTTTGAGATCAAAGCACACATGTCTCTGGCACCGCTAACTCGAGTACAATGTGAAGACTCTGTGCTAGAGGACCTGGACCGCTATCTTGCCCAACCCGACAGTACTCTGAATGGACTGAAGGACTGGACAGGGCACAAACCTCGCAGTTCAGGTCCCACCAGACCCAGGCATAGTGCACAAGGAGACTGTGTGGTCATAACTGAGAGCCAGAAGGCAGATGATGGACCAGACCGCAGTCGTTACGGCCGCATGAAGCTCCTGCATTTCCATGACAACTATCGGCCAGCTTATTGGGGAACCTGGAGCAAAAAAAGCACCCACATCTCGCCACGCTGCCCGTTGAGGCTGGACAAGGATCTGCTGGATTATGAGGTGGACAGTGATGAAGAGtgggaggaggaggagccaggAGAGTCTCTGTCACACAGTGAGGGGGATGACGATGACGAAGCAGGAGAggacgacgatgatgatgatgggtTTTTTGTGCCCCATGGTTATCTCTCAGAAGGGGAAGGAGCACTTGAAGATGAGGAGGGTGGAGACCCAGAGAAGCAGAAGGTGCGTCAGAGGATGAAGGCTCGTGAATGGGAGAATGAGCTGATGTCTAAAGGGAAGGTGAAGGTTTTGGAGGCTGTGGTACGCGGCTGCTTTTGGGAAggagaaaagcccttgcctgactTCCTGCAACCATACGCTGTCTGCATGCTGGAGCCTTTATCTAAAGATGAGGCCTCCACCCCTGAACAAGACGCCTCACGCCAGCAGAGGAACGAGAAACTGCTTACAATGCTGCTGCCATTGCTGCATGGGAATGTGAATAGCAATAAGGTGATAATCACCGAGTTCCTCGAGTTTTGTCGCCAACAAACCTCCTCGCCCACAGAAAGCCTTCTCAATACGACAGAGAGCATTCCACCCAGGATCCATGTCAGGCGTATCATCAAGGAGAACGCCGTGTATGAAAAGCGCTCCACATTTAAACGCTGCTGCTGGTACGTGCATGCAGATGTTCTGGCCCGTTACTCTCAGGAGGCTTTACCCGTTCCCTGCCAGTGGAGCTACCTCACCTCTGGGGCAAATGTCACCCGCGATGAGCATAGCGGCTCACAGGGCAATTCGCCCACCACAAACTCTTCTACCACACCCTCCAACAAGAGGAAAAGCGCCAGCAGCCACTCCATCACCAAGTATATGAAGAAATGTGGTGAATCTGAACAGACTGAGGCCATGGAGACAGATGGCTTCCAGGCAGATACAGAGGATGATGAAGACGATGATTGTATCATCATTGGAGAGCAATCTGgatCCTCTGAACAGGACATCAACACATCCTTGCCACAAACAGATCGAGAAACAGAGCCCATGGACACGAGTGCATCTGAAACTGCTGCTCTCGCCTTGCCCTGTCCCACCCCTGCCACCGCCTGACCTCTTCCAATTGGGTTTGCATGCACATGAACCAGACGCTCAAAATCCGATCACCCGATTCAAAGGATCTCACAGTATTAAAGGTCCCCTGAATGAATCAATGTTCCCTCTTCTTTAAGTGGAGGTCCGTTAGTTGGTGTACCACTCTTCTTCATAGGAGAGCTCCCACTTTTTCAGAGTATGTAAAGGCTCTGCTGATTCTCTGACACCAATCAGGACGTTGATGCTGAGTGCTCGGCCCCATTGTTTTAAATttagatattttgtttttgtttctcctCTCAGAATACTTGAACTGGTGTATGTCTTTCAAAAATAACGACAATTGAAATATATTGCACTTTTATATTCCACTTCTGTTTATTTCATTCTTCTACCCCCACCGGAGGTCCTTCCCCTTGTTTTCTTTTCCAAGAGGCTTTGTATAAATCTAGCACTCGCCATGCTGCTATATACGGTGTAAATACTACTTTTGTTATTTTGAGCAACGGTGTAGAGGCTGAAATAGTAGGTGGCCGTCCAGCATGGGGGCGAGAAGGGGAACCAGCAGCTTATGGCGAAGTGTTTTCTTAATTGTTACAAATAAACTGCGCCGTAGTTTGCAGTTGTAATGGGTTTCTTACAAAGCTTGTTtaaataaagcattatttaaaaaaatgattaactTTTAATTTGCCGTCAAGGAACGTCTTTCCTTCCAAATGCTCGATTTGTGCACAGTGAAAGCCAGTTTGGTTCCTCTTACCGGACGATGCATTTTATTTCATACATCACATCAAAAGCAACAGAACAACGTTTTGATGTCTACAAATCGGTGAG
>TCONS_00041506
ATGGTGGTCGTGATGCTCGCGGCCGAAGAGCCTTTGGCCTCCACTCCACGCAGAGATATGGATTGTGTGGGCAAAGCTAATACCAACAAGAAGCTTGTTCAAGCACGTCTGCCTTTCAAAAGGCTCAACCCTGAACCCAAGGAATGCAATGAGCCCAAAAGAACCAAAGGTCCCGTTGCTCCCAAGTGTTCTGAACCCAGTGATCAGGAAAATGATCAGGACAGCTCCTCCATCTCGCACCATGGCCCGGCTCTGGTGAACGGCCGTGGTCCTCTTGATTGCTTCATGAGTCGGCGGAAGCGTTCCCCGCTCCGCTCAGCCCCTGAAGCCACTATCGACCTAACTGAAGACTCAAACGATTCTGCCAAACAGCAGCCGGCACCTCCTATCGCTGCCACCTGCCCTCTTAGTGAAGAGAAAACAAAGACCTCTGAAGGTACTACAGAACCGACTATACCACTGACAGAGGAGGAGACTGAAAAGGATGAAGCTGAAGATGTAGATGCCCTCCCGCTTCTGGACATCACTCAGGACTCTGacactgaggaggaggaggaggaggaggaggaggaagaggagcagCAGCAGGAGGCTGAAGTCAGTCATGGGAATGAGTCTGTGCTGTCCACAGGGTCCACCAGCTCCGCCTCTGTGATCGCGAGCTCACCAGAGCCCAGCAAAAGTGCTCCCACCACCCCTGCTTCTacATCACGGATAAATGCAGCTAATAAAGTGAAGAGACGATCCcttaagAGTGTTCAAGAGCAGGAGGAGAAGCAGCGACAGAGGGATGAGAAAGAACGGCTGAAACAGGAGGCCAAAGCTGCCAAGGAGAAGAAGAAAGAGGAGGCCCGCAAGATGAAGGAGGAGAAGGAGAgggagaaaaaagagaaaaaggagAAAGATGAAAAGGAGCGGCGGGAAAAAAAGGAGAGGGACGAAAAAGAAAAAGCAGAtaaattaaaagctaaagaagAGCAACGGCAGATGAAAATTGAggccaaactagaagagaaaaggaagaaagaagagGAAAAACGGTTAAAGGAAGAGAAAGATCGAATTAAAGCTGAGAAGGCTGAGATTACACGGTTTCTGCAAAAGCCCAAGACCCAGTTGGCACCAAAGACTCTGGCTTCTGCCTGCGGGAAGTTTGCTCCGTTTGAGATCAAAGCACACATGTCTCTGGCACCGCTAACTCGAGTACAATGTGAAGACTCTGTGCTAGAGGACCTGGACCGCTATCTTGCCCAACCCGACAGTACTCTGAATGGACTGAAGGACTGGACAGGGCACAAACCTCGCAGTTCAGGTCCCACCAGACCCAGGCATAGTGCACAAGGAGACTGTGTGGTCATAACTGAGAGCCAGAAGGCAGATGATGGACCAGACCGCAGTCGTTACGGCCGCATGAAGCTCCTGCATTTCCATGACAACTATCGGCCAGCTTATTGGGGAACCTGGAGCAAAAAAAGCACCCACATCTCGCCACGCTGCCCGTTGAGGCTGGACAAGGATCTGCTGGATTATGAGGTGGACAGTGATGAAGAGtgggaggaggaggagccaggAGAGTCTCTGTCACACAGTGAGGGGGATGACGATGACGAAGCAGGAGAggacgacgatgatgatgatgggtTTTTTGTGCCCCATGGTTATCTCTCAGAAGGGGAAGGAGCACTTGAAGATGAGGAGGGTGGAGACCCAGAGAAGCAGAAGGTGCGTCAGAGGATGAAGGCTCGTGAATGGGAGAATGAGCTGATGTCTAAAGGGAAGGTGAAGGTTTTGGAGGCTGTGGTACGCGGCTGCTTTTGGGAAggagaaaagcccttgcctgactTCCTGCAACCATACGCTGTCTGCATGCTGGAGCCTTTATCTAAAGATGAGGCCTCCACCCCTGAACAAGACGCCTCACGCCAGCAGAGGAACGAGAAACTGCTTACAATGCTGCTGCCATTGCTGCATGGGAATGTGAATAGCAATAAGGTGATAATCACCGAGTTCCTCGAGTTTTGTCGCCAACAAACCTCCTCGCCCACAGAAAGCCTTCTCAATACGACAGAGAGCATTCCACCCAGGATCCATGTCAGGCGTATCATCAAGGAGAACGCCGTGTATGAAAAGCGCTCCACATTTAAACGCTGCTGCTGGTACGTGCATGCAGATGTTCTGGCCCGTTACTCTCAGGAGGCTTTACCCGTTCCCTGCCAGTGGAGCTACCTCACCTCTGGGGCAAATGTCACCCGCGATGAGCATAGCGGCTCACAGGGCAATTCGCCCACCACAAACTCTTCTACCACACCCTCCAACAAGAGGAAAAGCGCCAGCAGCCACTCCATCACCAAGTATATGAAGAAATGTGGTGAATCTGAACAGACTGAGGCCATGGAGACAGATGGCTTCCAGGCAGATACAGAGGATGATGAAGACGATGATTGTATCATCATTGGAGAGCAATCTGgatCCTCTGAACAGGACATCAACACATCCTTGCCACAAACAGATCGAGAAACAGAGCCCATGGACACGAGTGCATCTGAAACTGCTGCTCTCGCCTTGCCCTGTCCCACCCCTGCCACCGCCTGA

Function

symbol description
chaf1a Predicted to be involved in nucleosome assembly. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; pectoral fin; pharyngeal arch 3-7 skeleton; somite; and ventricular zone. Human ortholog(s) of this gene implicated in colon cancer; high grade glioma; neuroblastoma; and systemic lupus erythematosus. Orthologous to human CHAF1A (chromatin assembly factor 1 subunit A).

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007049 cell cycle biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0033186 CAF-1 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-5366 Predicted to be involved in nucleosome assembly. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; pectoral fin; pharyngeal arch 3-7 skeleton; somite; and ventricular zone. Human ortholog(s) of this gene implicated in colon cancer; high grade glioma; neuroblastoma; and systemic lupus erythematosus. Orthologous to human CHAF1A (chromatin assembly factor 1 subunit A).

Ensembl:

ensembl_id ENSDARG00000062152

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041505 False 3473 mRNA 0.49 17 22276283 22301929
TCONS_00041506 True 2592 mRNA 0.52 16 22277102 22301672

Neighbor

gene id symbol gene type direction distance location
XLOC_021134 hdgfl2 coding downstream 17108 22234415 ~ 22259175 (-)
XLOC_021133 ap3d1 coding downstream 44563 22172272 ~ 22231720 (-)
XLOC_021132 cdc34a coding downstream 111945 22141040 ~ 22164338 (-)
XLOC_021131 C2CD4C coding downstream 145660 22129358 ~ 22130623 (-)
XLOC_021130 NA coding downstream 150543 22020509 ~ 22125740 (-)
XLOC_021136 si:ch211-129c21.1 coding upstream 14926 22316855 ~ 22340688 (-)
XLOC_021137 NA coding upstream 40456 22342385 ~ 22523455 (-)
XLOC_021138 camsap2a coding upstream 43207 22345136 ~ 22416337 (-)
XLOC_021139 BX649292.1 coding upstream 231657 22533586 ~ 22534463 (-)
XLOC_021140 nr5a2 coding upstream 332078 22634007 ~ 22719440 (-)
XLOC_021129 NA non-coding downstream 321117 21950702 ~ 21955166 (-)
XLOC_021128 BX649295.1 non-coding downstream 338795 21933125 ~ 21937488 (-)
XLOC_021124 NA non-coding downstream 728390 21544210 ~ 21547893 (-)
XLOC_021118 NA non-coding downstream 1155187 21119896 ~ 21121096 (-)
XLOC_021141 NA non-coding upstream 468593 22770522 ~ 22788728 (-)
XLOC_021142 NA non-coding upstream 523496 22825425 ~ 22861498 (-)
XLOC_021143 BX936380.2 non-coding upstream 642532 22944461 ~ 22944585 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_04718507_04729220 CHAF1A coding CI01000030 null 4718474 ~ 4729452 (-)