RNA id: TCONS_00041506


Basic Information

Item Value
RNA id TCONS_00041506
length 2592
RNA type mRNA
GC content 0.52
exon number 16
gene id XLOC_021135
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22276283 ~ 22301929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTGGTCGTGATGCTCGCGGCCGAAGAGCCTTTGGCCTCCACTCCACGCAGAGATATGGATTGTGTGGGCAAAGCTAATACCAACAAGAAGCTTGTTCAAGCACGTCTGCCTTTCAAAAGGCTCAACCCTGAACCCAAGGAATGCAATGAGCCCAAAAGAACCAAAGGTCCCGTTGCTCCCAAGTGTTCTGAACCCAGTGATCAGGAAAATGATCAGGACAGCTCCTCCATCTCGCACCATGGCCCGGCTCTGGTGAACGGCCGTGGTCCTCTTGATTGCTTCATGAGTCGGCGGAAGCGTTCCCCGCTCCGCTCAGCCCCTGAAGCCACTATCGACCTAACTGAAGACTCAAACGATTCTGCCAAACAGCAGCCGGCACCTCCTATCGCTGCCACCTGCCCTCTTAGTGAAGAGAAAACAAAGACCTCTGAAGGTACTACAGAACCGACTATACCACTGACAGAGGAGGAGACTGAAAAGGATGAAGCTGAAGATGTAGATGCCCTCCCGCTTCTGGACATCACTCAGGACTCTGacactgaggaggaggaggaggaggaggaggaggaagaggagcagCAGCAGGAGGCTGAAGTCAGTCATGGGAATGAGTCTGTGCTGTCCACAGGGTCCACCAGCTCCGCCTCTGTGATCGCGAGCTCACCAGAGCCCAGCAAAAGTGCTCCCACCACCCCTGCTTCTacATCACGGATAAATGCAGCTAATAAAGTGAAGAGACGATCCcttaagAGTGTTCAAGAGCAGGAGGAGAAGCAGCGACAGAGGGATGAGAAAGAACGGCTGAAACAGGAGGCCAAAGCTGCCAAGGAGAAGAAGAAAGAGGAGGCCCGCAAGATGAAGGAGGAGAAGGAGAgggagaaaaaagagaaaaaggagAAAGATGAAAAGGAGCGGCGGGAAAAAAAGGAGAGGGACGAAAAAGAAAAAGCAGAtaaattaaaagctaaagaagAGCAACGGCAGATGAAAATTGAggccaaactagaagagaaaaggaagaaagaagagGAAAAACGGTTAAAGGAAGAGAAAGATCGAATTAAAGCTGAGAAGGCTGAGATTACACGGTTTCTGCAAAAGCCCAAGACCCAGTTGGCACCAAAGACTCTGGCTTCTGCCTGCGGGAAGTTTGCTCCGTTTGAGATCAAAGCACACATGTCTCTGGCACCGCTAACTCGAGTACAATGTGAAGACTCTGTGCTAGAGGACCTGGACCGCTATCTTGCCCAACCCGACAGTACTCTGAATGGACTGAAGGACTGGACAGGGCACAAACCTCGCAGTTCAGGTCCCACCAGACCCAGGCATAGTGCACAAGGAGACTGTGTGGTCATAACTGAGAGCCAGAAGGCAGATGATGGACCAGACCGCAGTCGTTACGGCCGCATGAAGCTCCTGCATTTCCATGACAACTATCGGCCAGCTTATTGGGGAACCTGGAGCAAAAAAAGCACCCACATCTCGCCACGCTGCCCGTTGAGGCTGGACAAGGATCTGCTGGATTATGAGGTGGACAGTGATGAAGAGtgggaggaggaggagccaggAGAGTCTCTGTCACACAGTGAGGGGGATGACGATGACGAAGCAGGAGAggacgacgatgatgatgatgggtTTTTTGTGCCCCATGGTTATCTCTCAGAAGGGGAAGGAGCACTTGAAGATGAGGAGGGTGGAGACCCAGAGAAGCAGAAGGTGCGTCAGAGGATGAAGGCTCGTGAATGGGAGAATGAGCTGATGTCTAAAGGGAAGGTGAAGGTTTTGGAGGCTGTGGTACGCGGCTGCTTTTGGGAAggagaaaagcccttgcctgactTCCTGCAACCATACGCTGTCTGCATGCTGGAGCCTTTATCTAAAGATGAGGCCTCCACCCCTGAACAAGACGCCTCACGCCAGCAGAGGAACGAGAAACTGCTTACAATGCTGCTGCCATTGCTGCATGGGAATGTGAATAGCAATAAGGTGATAATCACCGAGTTCCTCGAGTTTTGTCGCCAACAAACCTCCTCGCCCACAGAAAGCCTTCTCAATACGACAGAGAGCATTCCACCCAGGATCCATGTCAGGCGTATCATCAAGGAGAACGCCGTGTATGAAAAGCGCTCCACATTTAAACGCTGCTGCTGGTACGTGCATGCAGATGTTCTGGCCCGTTACTCTCAGGAGGCTTTACCCGTTCCCTGCCAGTGGAGCTACCTCACCTCTGGGGCAAATGTCACCCGCGATGAGCATAGCGGCTCACAGGGCAATTCGCCCACCACAAACTCTTCTACCACACCCTCCAACAAGAGGAAAAGCGCCAGCAGCCACTCCATCACCAAGTATATGAAGAAATGTGGTGAATCTGAACAGACTGAGGCCATGGAGACAGATGGCTTCCAGGCAGATACAGAGGATGATGAAGACGATGATTGTATCATCATTGGAGAGCAATCTGgatCCTCTGAACAGGACATCAACACATCCTTGCCACAAACAGATCGAGAAACAGAGCCCATGGACACGAGTGCATCTGAAACTGCTGCTCTCGCCTTGCCCTGTCCCACCCCTGCCACCGCCTGA

Function

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007049 cell cycle biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0033186 CAF-1 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-5366 Predicted to be involved in nucleosome assembly. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; pectoral fin; pharyngeal arch 3-7 skeleton; somite; and ventricular zone. Human ortholog(s) of this gene implicated in colon cancer; high grade glioma; neuroblastoma; and systemic lupus erythematosus. Orthologous to human CHAF1A (chromatin assembly factor 1 subunit A).

Ensembl:

ensembl_id ENSDART00000111711

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042403 lncRNA downstream 151362 22072007 ~ 22125740 (-) False XLOC_021130
TCONS_00042404 lncRNA downstream 151362 22074569 ~ 22125740 (-) True XLOC_021130
TCONS_00041957 lncRNA downstream 202472 22050297 ~ 22074630 (-) False XLOC_021130
TCONS_00042402 lncRNA downstream 222130 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00042405 lncRNA upstream 40713 22342385 ~ 22523455 (-) True XLOC_021137
TCONS_00042406 lncRNA upstream 468850 22770522 ~ 22788728 (-) True XLOC_021141
TCONS_00042408 lncRNA upstream 523753 22825425 ~ 22861464 (-) False XLOC_021142
TCONS_00042407 lncRNA upstream 523753 22825425 ~ 22861464 (-) False XLOC_021142
TCONS_00042409 lncRNA upstream 523753 22825425 ~ 22861498 (-) False XLOC_021142
TCONS_00041504 mRNA downstream 17927 22234668 ~ 22259175 (-) True XLOC_021134
TCONS_00041503 mRNA downstream 34218 22234415 ~ 22242884 (-) False XLOC_021134
TCONS_00041502 mRNA downstream 45382 22172272 ~ 22231720 (-) True XLOC_021133
TCONS_00041501 mRNA downstream 112764 22141043 ~ 22164338 (-) True XLOC_021132
TCONS_00041500 mRNA downstream 129727 22141040 ~ 22147375 (-) False XLOC_021132
TCONS_00041507 mRNA upstream 15183 22316855 ~ 22340688 (-) False XLOC_021136
TCONS_00041508 mRNA upstream 27729 22329401 ~ 22337382 (-) True XLOC_021136
TCONS_00041509 mRNA upstream 43464 22345136 ~ 22416337 (-) False XLOC_021138
TCONS_00041510 mRNA upstream 43527 22345199 ~ 22416337 (-) True XLOC_021138
TCONS_00041512 mRNA upstream 332335 22634007 ~ 22719440 (-) True XLOC_021140
TCONS_00041498 other downstream 339614 21933125 ~ 21937488 (-) True XLOC_021128
TCONS_00041483 other downstream 1100958 21167096 ~ 21176144 (-) False XLOC_021120
TCONS_00041481 other downstream 1158086 21118902 ~ 21119016 (-) True XLOC_021117
TCONS_00041464 other downstream 1786545 20490441 ~ 20490557 (-) True XLOC_021106
TCONS_00041451 other downstream 2015203 20256767 ~ 20261899 (-) True XLOC_021099
TCONS_00041511 other upstream 231914 22533586 ~ 22534463 (-) True XLOC_021139
TCONS_00041513 other upstream 524118 22825790 ~ 22825878 (-) False XLOC_021142
TCONS_00041514 other upstream 642789 22944461 ~ 22944585 (-) True XLOC_021143
TCONS_00041524 other upstream 1195143 23496815 ~ 23496929 (-) True XLOC_021149
TCONS_00041540 other upstream 1450914 23752586 ~ 23754415 (-) True XLOC_021156

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_04718507_04729220.mRNA True 2386 mRNA 0.51 12 CI01000030 4718474 ~ 4729452 (-)