RNA id: TCONS_00041503


Basic Information

Item Value
RNA id TCONS_00041503
length 892
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_021134
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22234415 ~ 22259175 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAGGCCTAAAGCCGAGAAGCCGAAACGGAAGCCGGTGCGTCCACCTGAGAAGAAAGTAGAGAAGAAAAAAGAGCCCTCGCCAGAAGAGAAGTTACAGAAGCTCCACACAGACATCAAGTTTGCACTAAAAGTTGACAACCCGGACATTGAGAAGTGTCTACAAGCCTTGGATGAGCTCAGCTCGGTACAAGTGACCACTCACATCTTGCAGAAGAATGCTGATGTTATTGCCACCCTCAAAAAGaTTCGTCGGTACAAAGCCAGCAATGCAGTCATGGAGAAGGCCACCGCAGTCTATAATAAACTAAAGCTTCAGTTCATTGGCAAAATTGAGACTGGTAAACCAAAACCCAATGAAAAGAATCAAGAAGAGCAAGACGCACAAAACACAGACGATTCCAAACCAGTGAATGGAGAATCCGAAGGAGAGAGAAAAGACGTTTCTGAATCTGAAAGCAATTCCAAACCCACAGACCAAGACAACCCGGATGAGAACAAATCCCCAAATGGCATCAGGCCTGATCCAGATGAGCCAGCAGATCAGCTAAATGACTCTACAGAGGCGGATCCCACAGCGGACACAGATGTAAAAGAGGACAGCAGAGAGCAGGACGAGCAGATGTCGTCTGAGAGCTAACTGCGCTCGCCTCCTTTTATGCTCACAAACACACCTTGGCTTCCTTCATTCATCTGTGTTACTTTTTGTCTGCCCACCTTTGTGACTTACATGAGTTTTTCTTCGTGTTGTACATAAAACGTGACATGAACATTTATTAGCACTTTTGAATCGAGGCGTCACGAGGCAAACAAGCGCCTTAACCTAAATGTTCCACGCGGAGGATTCTGATGATCGAGCGGGAACGTTTTATTTCAGAACCACACTGACgtct

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2104 Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in notochord. Orthologous to human HDGFL2 (HDGF like 2).

Ensembl:

ensembl_id ENSDART00000020937

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042403 lncRNA downstream 108675 22072007 ~ 22125740 (-) False XLOC_021130
TCONS_00042404 lncRNA downstream 108675 22074569 ~ 22125740 (-) True XLOC_021130
TCONS_00041957 lncRNA downstream 159785 22050297 ~ 22074630 (-) False XLOC_021130
TCONS_00042402 lncRNA downstream 179443 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00042405 lncRNA upstream 99501 22342385 ~ 22523455 (-) True XLOC_021137
TCONS_00042406 lncRNA upstream 527638 22770522 ~ 22788728 (-) True XLOC_021141
TCONS_00042408 lncRNA upstream 582541 22825425 ~ 22861464 (-) False XLOC_021142
TCONS_00042407 lncRNA upstream 582541 22825425 ~ 22861464 (-) False XLOC_021142
TCONS_00042409 lncRNA upstream 582541 22825425 ~ 22861498 (-) False XLOC_021142
TCONS_00041502 mRNA downstream 2695 22172272 ~ 22231720 (-) True XLOC_021133
TCONS_00041501 mRNA downstream 70077 22141043 ~ 22164338 (-) True XLOC_021132
TCONS_00041500 mRNA downstream 87040 22141040 ~ 22147375 (-) False XLOC_021132
TCONS_00041499 mRNA downstream 103792 22129358 ~ 22130623 (-) True XLOC_021131
TCONS_00041497 mRNA downstream 337153 21852113 ~ 21897262 (-) True XLOC_021127
TCONS_00041505 mRNA upstream 33399 22276283 ~ 22301929 (-) False XLOC_021135
TCONS_00041506 mRNA upstream 34218 22277102 ~ 22301672 (-) True XLOC_021135
TCONS_00041507 mRNA upstream 73971 22316855 ~ 22340688 (-) False XLOC_021136
TCONS_00041508 mRNA upstream 86517 22329401 ~ 22337382 (-) True XLOC_021136
TCONS_00041509 mRNA upstream 102252 22345136 ~ 22416337 (-) False XLOC_021138
TCONS_00041498 other downstream 296927 21933125 ~ 21937488 (-) True XLOC_021128
TCONS_00041483 other downstream 1058271 21167096 ~ 21176144 (-) False XLOC_021120
TCONS_00041481 other downstream 1115399 21118902 ~ 21119016 (-) True XLOC_021117
TCONS_00041464 other downstream 1743858 20490441 ~ 20490557 (-) True XLOC_021106
TCONS_00041451 other downstream 1972516 20256767 ~ 20261899 (-) True XLOC_021099
TCONS_00041511 other upstream 290702 22533586 ~ 22534463 (-) True XLOC_021139
TCONS_00041513 other upstream 582906 22825790 ~ 22825878 (-) False XLOC_021142
TCONS_00041514 other upstream 701577 22944461 ~ 22944585 (-) True XLOC_021143
TCONS_00041524 other upstream 1253931 23496815 ~ 23496929 (-) True XLOC_021149
TCONS_00041540 other upstream 1509702 23752586 ~ 23754415 (-) True XLOC_021156

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_04698354_04705529.mRNA True 2092 mRNA 0.42 10 CI01000030 4697592 ~ 4705746 (-)