XLOC_021134 (hdgfl2)


Basic Information

Item Value
gene id XLOC_021134
gene name hdgfl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22234415 ~ 22259175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041503
ACAAGGCCTAAAGCCGAGAAGCCGAAACGGAAGCCGGTGCGTCCACCTGAGAAGAAAGTAGAGAAGAAAAAAGAGCCCTCGCCAGAAGAGAAGTTACAGAAGCTCCACACAGACATCAAGTTTGCACTAAAAGTTGACAACCCGGACATTGAGAAGTGTCTACAAGCCTTGGATGAGCTCAGCTCGGTACAAGTGACCACTCACATCTTGCAGAAGAATGCTGATGTTATTGCCACCCTCAAAAAGaTTCGTCGGTACAAAGCCAGCAATGCAGTCATGGAGAAGGCCACCGCAGTCTATAATAAACTAAAGCTTCAGTTCATTGGCAAAATTGAGACTGGTAAACCAAAACCCAATGAAAAGAATCAAGAAGAGCAAGACGCACAAAACACAGACGATTCCAAACCAGTGAATGGAGAATCCGAAGGAGAGAGAAAAGACGTTTCTGAATCTGAAAGCAATTCCAAACCCACAGACCAAGACAACCCGGATGAGAACAAATCCCCAAATGGCATCAGGCCTGATCCAGATGAGCCAGCAGATCAGCTAAATGACTCTACAGAGGCGGATCCCACAGCGGACACAGATGTAAAAGAGGACAGCAGAGAGCAGGACGAGCAGATGTCGTCTGAGAGCTAACTGCGCTCGCCTCCTTTTATGCTCACAAACACACCTTGGCTTCCTTCATTCATCTGTGTTACTTTTTGTCTGCCCACCTTTGTGACTTACATGAGTTTTTCTTCGTGTTGTACATAAAACGTGACATGAACATTTATTAGCACTTTTGAATCGAGGCGTCACGAGGCAAACAAGCGCCTTAACCTAAATGTTCCACGCGGAGGATTCTGATGATCGAGCGGGAACGTTTTATTTCAGAACCACACTGACgtct
>TCONS_00041504
ATGCCGCACAACTTCCGGCCCGGGGATCTTGTCTTCGCTAAAATGAAGGGTTACCCTCACTGGCCGGCCCGGATTGAAGATGTTGCAGACGGGGCTGTCAAACCACCTCCTAATAAGATCCCCATTTTCTTCTTTGGGACTCATGAAACAGCATTCCTTGCACCCAAAGACCTTTTTGCATATGAAAAAAACCAGGAACGCTTTGGGAAACCCAACAAAAGGAAAGGGTTCAACGAAGGCTTATGGGAAATCCAAAACAACCCCCATGCCTCCTATAACACCCCTGCTGCTGCATCATCATCGGACAGTGAGGACAACCAACCTGCTGCTGCAAGTGATGCGGAGGAAGAAGAGGAAGCAGTGGTACCAAGAAAAGCCGAAACGGGAAGCGATGATTCTGACTCCGGGAGTGAGGATCAAAAGAAGCCCGCAGTGAAGCGGAAAGCTCCTGCTCTAAAGCGGCCACCAGTGAAGAAAGCACGGGCATCATCCAGTGATCGAGATGGAGAGGAGAGTGGATCTCCCTCAGAACCAGAACCGTCACCCAGCTCAGACTCGGACTCCGGCAAAAACAGTGACCAGGACTTCACACCACAGAAAGAGTCAGGCGGTCGAGGAGGCAAAAAGCCAGCTGGCAGGGGCAGGAGGAAGAAGGCGTCTTCTGGCTCTGATTCAGACTCTGGGTCTCAGTCGGATCAGAAGGCTGCCAGGAGCGATTCAGAAGATGAAAAGCCACGACCAGCTGCTTCCGGATCTGAATCGCAGTCTGGATCCAAATCGGACTCCGATTCAgagcctcctcctcctcctccccctaCAAGAAAAGCCCCACAAGGACGCAAGAAAGCGGAGAAACCACCACCAAAGCCACGGGCAAGGAAACCCAAACCAGCTCCAGAACGAGCTCCTTCCTCATCATCAGATAGCGATAGtgacAGCGACACAGACCGCGTCAGTGAGTGGAAGAAGAGAGACGAGGAGCGGAGGAAGGAGCTGGAAGAGCGGAGAAAGAGAGAGGAGGCCGAAGAGCTCCGCCGGCTCCGggagcgagagaaagaggaggaagaaaaaaggaaaaaagacaaaGAGACCAAGGTGAGGAGAGGAAGCAGCAGCAGTGGTAGCAGCTCCTCGGACGATGAAGTAGACGATCATCCTCTCAAAAAATCTAAGAAACCTCCGCCTCCACCCATCCCTGCACCGTCTGACTCGGACTCGCCACCCCCCTCAGAGctgaaaaagaaaaaagaaagccaAAAAGGGCGGCAAAAGAAAGAGAAGGAGGTGAAGGAGAAAAAAGAGAGACCGGTCAAAGAGAAGAAGCcacagagatcagaggagaaacACAAAGCAAAGCCTAAAGCCGAGAAGCCGAAACGGAAGCCGGTGCGTCCACCTGAGAAGAAAGTAGAGAAGAAAAAAGAGCCCTCGCCAGAAGAGAAGTTACAGAAGCTCCACACAGACATCAAGTTTGCACTAAAAGTTGACAACCCGGACATTGAGAAGTGTCTACAAGCCTTGGATGAGCTCAGCTCGGTACAAGTGACCACTCACATCTTGCAGAAGAATGCTGATGTTATTGCCACCCTCAAAAAGaTTCGTCGGTACAAAGCCAGCAATGCAGTCATGGAGAAGGCCACCGCAGTCTATAATAAACTAAAGCTTCAGTTCATTGGCAAAATTGAGACTGGTAAACCAAAACCCAATGAAAAGAATCAAGAAGAGCAAGACGCACAAAACACAGACGATTCCAAACCAGTGAATGGAGAATCCGAAGGAGAGAGAAAAGACGTTTCTGAATCTGAAAGCAATTCCAAACCCACAGACCAAGACAACCCGGATGAGAACAAATCCCCAAATGGCATCAGGCCTGATCCAGATGAGCCAGCAGATCAGCTAAATGACTCTACAGAGGCGGATCCCACAGCGGACACAGATGTAAAAGAGGACAGCAGAGAGCAGGACGAGCAGATGTCGTCTGAGAGCTAA

Function

symbol description
hdgfl2 Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in notochord. Orthologous to human HDGFL2 (HDGF like 2).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2104 Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in notochord. Orthologous to human HDGFL2 (HDGF like 2).

Ensembl:

ensembl_id ENSDARG00000019530

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041503 False 892 mRNA 0.46 6 22234415 22242884
TCONS_00041504 True 1989 mRNA 0.51 16 22234668 22259175

Neighbor

gene id symbol gene type direction distance location
XLOC_021133 ap3d1 coding downstream 2695 22172272 ~ 22231720 (-)
XLOC_021132 cdc34a coding downstream 70077 22141040 ~ 22164338 (-)
XLOC_021131 C2CD4C coding downstream 103792 22129358 ~ 22130623 (-)
XLOC_021130 NA coding downstream 108675 22020509 ~ 22125740 (-)
XLOC_021129 NA coding downstream 279249 21950702 ~ 21955166 (-)
XLOC_021135 chaf1a coding upstream 17108 22276283 ~ 22301929 (-)
XLOC_021136 si:ch211-129c21.1 coding upstream 57680 22316855 ~ 22340688 (-)
XLOC_021137 NA coding upstream 83210 22342385 ~ 22523455 (-)
XLOC_021138 camsap2a coding upstream 85961 22345136 ~ 22416337 (-)
XLOC_021139 BX649292.1 coding upstream 274411 22533586 ~ 22534463 (-)
XLOC_021128 BX649295.1 non-coding downstream 296927 21933125 ~ 21937488 (-)
XLOC_021124 NA non-coding downstream 686522 21544210 ~ 21547893 (-)
XLOC_021118 NA non-coding downstream 1113319 21119896 ~ 21121096 (-)
XLOC_021141 NA non-coding upstream 511347 22770522 ~ 22788728 (-)
XLOC_021142 NA non-coding upstream 566250 22825425 ~ 22861498 (-)
XLOC_021143 BX936380.2 non-coding upstream 685286 22944461 ~ 22944585 (-)

Expression


Co-expression Network