XLOC_021099 (mbd3b)


Basic Information

Item Value
gene id XLOC_021099
gene name mbd3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20246587 ~ 20261899 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041450
GTCTAGTCGTGGCCGAGTCTCAGGACCCAACATCTCCTTCTCCTCAGCGGAACCAGACGATCACTGGACTGCTGGAGTGCAGGAAAAAAGATGAGAGCAAACTGATCAAACACCTCATAACAGACGTGCGAGCAGAGAGCGTCTTGTCTTCATCTCCTGGACTAGTGGCTCGggttttgtttctgtgtgtgcgtCAGGTGGACTGCAGCGGAGATCAGGCACGGGTCAAGGGACTTTGCAGTGCTGTTGTGAGCGGCATTAAAACTGCCCTGAAGAAACATGGCAATGATCTGGACATGACGGCTGTGTGGCTGAAGAACTCGTATGTGCTCAGAGACTTGCTGCTCCAGCACTCTCCCcgacagGAGTCTAGGGGTTCAGAGGATCTGCTTCCTCTAGTGACGGATGTGCAGGAGTTTGTTCGAGCTCTCAGTGATCTGTGCATTCAGTCCTATCAGCAGCTGCTGTCCATCTCCGAGAGCCGCCTGCAGCCCATcatcaTCCCGGCGATGCTGGAGAGTGAGATGATTCCTGGTCTGGCTGGATCCTCAGTAAAGCTGAGCGCTGCTCGTAAGCGGGCCGGTTCAGATCCGCGTCCTCCAGGCGGTTCAGAAGGAGTCAGTATGTCCTCAGTCCTGCGGGAGCTTTCGGCCCTTCACACGGCCTTGTCCCGTCAACACCTGCCCTCCGTCCTGCAGGAACAGGCCTTTCACCAGCTCGTGTACCTGCTGTCCGCATCCACCCTCAACAGTCTGCTGCTGCGCAAGGACATGTGCTGCTGGAGCCGAGGCCTGCAGATCCGGTATAATGTGAGCGTGCTGGAGGAGTGGCTGCGGGCTCGTTCTCTTCAGACAGGAGGCGCTGTGGGGACTCTGGAGCCGCTGATACAGGCCGCACAGCTCCTGCAGATGAGCAAGAAGACTGAAGCGGACGCACAGGCCATGGTTCAAGCCTGCAGCGCACTGACTAACCAGCAGATGGTGAAGATCTTGAGTCTGTACACACCTCAGAGTGATCTGGAGGAGCGAGTGACGCTCAACTTCATCCGTCTGGTTCAGGGCCGCTCGGAAGGTCCTCCTCAGCTGCTGCTGGACGTCCGGCGTGTGTTTCCTGTCACCTTCCCTCATGATCCTCCAGCGCAGGTCACCGCAGAGCAGATGCAGATCCCTGAGGCCCTCAAGATCAACTTCCTGCGCAGAGTC
>TCONS_00041451
gctttctagaaacagccatgcaggtgtgttgagAGCATGCTGATGGAGGATATGAGTGTTGCAAAGGATGCAGCTGAGAGGATGAAGAGCGAGGATTTCAGACATGCCTACGATGCTATTCGTGTGGCCAACAAGTTTCTAGAGACGCAGCTGTTGTCTCAGAGAGCGCAGTGGGAGCAGGAGATTTCAGCTCTCAGGACGAATCTTCAGCAGCTACAAGACAGAGACATGCCTGGAGATCCTGACAAAAATGATCTAATGGAGCAGGTGATGGTTCGAGAGCAGGAATGTGTCCGATTGCGGCGTGAGCTTAAGGAGCTGAAACATACCGTGAGCCTCAGGAGAATTCTGTCTTATTCAGGTCTAGTCGTGGCCGAGTCTCAGGACCCAACATCTCCTTCTCCTCAGCGGAACCAGACGATCACTGGACTGCTGGAGTGCAGGAAAAAAGATGAGAGCAAACTGATCAAACACCTCATAACAGACGTGCGAGCAGAGAGCGTCTTGTCTTCATCTCCTGGACTAGTGGCTCGggttttgtttctgtgtgtgcgtCAGGTGGACTGCAGCGGAGATCAGGCACGGGTCAAGGGACTTTGCAGTGCTGTTGTGAGCGGCATTAAAACTGCCCTGAAGAAACATGGCAATGATCTGGACATGACGGCTGTGTGGCTGAAGAACTCGTATGTGCTCAGAGACTTGCTGCTCCAGCACTCTCCCcgacagg

Function

symbol description
mbd3b Predicted to enable actin filament binding activity; cytoskeletal motor activity; and nucleotide binding activity. Acts upstream of or within definitive hemopoiesis and hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Predicted to be part of NuRD complex and myosin complex. Is expressed in several structures, including Kupffer's vesicle; central nervous system; forerunner cell group; midbrain neural keel; and retina. Orthologous to human MBD3 (methyl-CpG binding domain protein 3).

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9792 Predicted to enable actin filament binding activity; cytoskeletal motor activity; and nucleotide binding activity. Acts upstream of or within definitive hemopoiesis and hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Predicted to be part of NuRD complex and myosin complex. Is expressed in several structures, including Kupffer's vesicle; central nervous system; forerunner cell group; midbrain neural keel; and retina. Orthologous to human MBD3 (methyl-CpG binding domain protein 3).

Ensembl:

ensembl_id ENSDARG00000061810

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041450 False 1202 mRNA 0.57 8 20246587 20259309
TCONS_00041451 True 727 processed_transcript 0.51 7 20256767 20261899

Neighbor

gene id symbol gene type direction distance location
XLOC_021098 btbd2a coding downstream 79923 20159067 ~ 20166664 (-)
XLOC_021097 creb3l3a coding downstream 120357 20112715 ~ 20126230 (-)
XLOC_021096 rxfp3.2b coding downstream 140618 20104706 ~ 20105969 (-)
XLOC_021095 celf5a coding downstream 234983 19665617 ~ 20011604 (-)
XLOC_021094 NA coding downstream 608558 19622740 ~ 19638029 (-)
XLOC_021100 mbd3b coding upstream 5623 20267522 ~ 20309283 (-)
XLOC_021101 tcf3b coding upstream 50281 20312180 ~ 20342260 (-)
XLOC_021102 zbtb7a coding upstream 110634 20372533 ~ 20386982 (-)
XLOC_021103 map2k2a coding upstream 126722 20388621 ~ 20403194 (-)
XLOC_021104 pias4a coding upstream 144511 20406410 ~ 20419660 (-)
XLOC_021093 NA non-coding downstream 644125 19598045 ~ 19602462 (-)
XLOC_021090 BX936298.1 non-coding downstream 816663 19429806 ~ 19429924 (-)
XLOC_021089 BX936298.2 non-coding downstream 846652 19397226 ~ 19399935 (-)
XLOC_021088 BX927243.3 non-coding downstream 1030399 19215022 ~ 19216188 (-)
XLOC_021106 BX088720.1 non-coding upstream 228542 20490441 ~ 20490557 (-)
XLOC_021107 NA non-coding upstream 260305 20522204 ~ 20547540 (-)
XLOC_021117 CU693455.1 non-coding upstream 857003 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 857997 21119896 ~ 21121096 (-)
XLOC_021124 NA non-coding upstream 1282311 21544210 ~ 21547893 (-)

Expression


Co-expression Network