XLOC_021098 (btbd2a)


Basic Information

Item Value
gene id XLOC_021098
gene name btbd2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20159067 ~ 20166664 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041446
CGTGGGAAGGCAGTCATTTGGCCAGTATTTCTGGTTATGCGCTGTTGTGTATGTTTATTTCAGCAAAGCCTGCAGTGTTCACCATCCAAGATGGCTGCGGGTGAAAGCAATAGCCGATCCTCGTGTCTAAACTTGTCGAATTCGGGGCCGCTCGGCAATGCACCGCCGAGCAACAGCGCCCATTCTTCGCCCGCGAGCAACAGGGGAGCCGGGGGTGCAGCCGGGGGGATCAACCGGAGCGCGGGGAATTCGAACCCTCAGTCGGGCCCGGAGAACGGCGGAGGCACCGAGTCTGCGGTGAGAAGCACGCCGAGCGCGCACAACCCTCCTCGGCAGACGGTCGGCCAGAGCGGAGCCTCTTCAGGCGCTGCGTCAAACATGACGGcgacatcttcatcatcatcatcctcctcctcatcctcatcCGCGTCTACCGCATCCTCCTCCGCCGATGCGTCCGCCGCCGCCGCCGTCTCCTCGCTTCCCAGCAGCCCGGCTTCGGTTTTGGTTTATCGAGAGCCGGTCTACAACTGGCAAGCGACAAAAAGTACAGTGAAAGAAAGGTTTGCATTTTTGTTTAACAACGAAGTGCTAAGTGACGTCCATTTTTTGGTTGGGAAGGGAATGGGAGTGCAGCGCATTCCAGCGCACAGATTTGCTCTCGCTGTGGGAAGTGCCGTGTTTGATGCCATGTTCAACGGTGGCATGGCAACAACGTCGACCGAAATTGAACTGCCAGATGTGGAACCGGCTGCATTTCTAGCCCTTCTCAAATTTTTATACTCAGATGAAGTGCAAATTGGACCAGAGACCGTTATGACCACATTATACACAGCCAAAAAGTATGCAGTACCTGCGCTTGAGGCCCACTGCGTTGAATTCTTGAAGAAAAACCTACGCGCTGACAACGCATTTATGTTGCTTACCCAGGCACGGCTTTTTGACGAGCCCCAGCTGGCAAGTCTCTGCTTAGAAAATATCGACAAGAACACAGCTGATGCACTCGCTGCTGAGGGCTTCACGGATGTTGACCTTGATACCCTCGTAGCAGTCCTGGAGAGAGACACACTTGGTGTACGGGAAGTGCGTCTCTTCGGAGCTGCTGTTCGTTGGGCAGAAGCTGAGGCCCAAAGGCAACAATTACAGCCTACACCGGAGAACAAGCGAAGAGTGTTGGGAAAGGCACTTGCCCTTATTCGCTTTCCACTCATGACAATTGAAGAGTTTGCAGCAGGTCCGGCTCAATCTGGTATACTCACAGACCGGGAGGTGGTCAGTCTGTTCCTGCATTTTACCGTCAATCCGAAACCACATGTGGAGTTTATTGACCGGCCCCGCTGTTGCCTCCGGGGGAAAGAGTGCAGCATCACGCGTTTCAGTCAGGTGGAGAGCCGCTGGGGCTACAGTGGAACCAGTGACCGCATCCGGTTTTCTGTGAACCGCAGAATATTTGTGGTGGGATTTGGACTTTATGGCTCTATACATGGTCCAACTGACTATCAGGTCAACATCCAGATCATACACACAGACAGTAACACAGTTCTCGGACAGAACGATACAGGCTTTAGTTGTGACGGAACAGCCAGCACATTCAGAGTGATGTTCAAGGAGCCAGTGGAAATTCTTCCAAGTGTCAATTACATCGCCTGCGCCACCCTGAAGGGACCAGACTCTCATTATGGCACCAAGGGGATGCGTAAAGTCACCCATGAAGCCCCCGCAACTGGTACTAAGACCTGCTTTACATTCTGCTATGCTGCAGGCAACAACAACGGCACTTCTGTAGAAGATGGACAAATCCCAGAGGTCATCTTCTACACATAATGACCGAGCAGAGTCGTCAAACAATCGAGGACTCTTACATTGCATTTTGTGGCCAATTCGCCAGTCTCGGTGTGTAGACTGGTGACCAAATACTGATCTCTCATTTCTAAAGGCTTTCATTGTTAAGCATGAGAATTCAGTTCTTTCAAAGTGTACTTAGGgtacagtcagattttgtttcTACCCAAGTAGCACCTTGTAGTACAACCTTGAAGTCACAACCAGCCAATGTCATTGCTCAGTAATGAACTCATTTCAGAGATCTACTACAGGTACAGCACAGGAACTCGAGGGTAACTCTTCCATTTGTCCGTTTATTTGAAAATGGAATGCTGGTGATTCATTTGGTCCCACCTTTGACCCTTGATTGTTTATTGCTGACGATCAGTCCTTCAAATGGCATAGATGCACTTCGGCCCTAGGCACAACAGCGAGTTTGGAGAAAGTACACTACACCGTAAGACATAATTTCATTGTAAAACAGACTGTTATATACCCATTGGAGTGGCCTGCACCCTATGTTAGAGGTGAAACTCGATTTCTTTGAAAGCAGTGTGAATGGTATACGTGTATAAGGTGTGGTTTTACCTTAGCCGCCCTCCTTGTTGATAGTGATTAAACTACAAGAGCACTTGCATTCACAATGCCACTATGTAAAAAAGCTCCAAAGTATTGACTGCAGTGAATTACTGAACACATTTCTGTTACCGATTatgaatatttctttttttttaagatgttgataTAAGGAAGACGAACAGGAAAAACAGCTTCATGAATGTACCAATGCTTACTTTGTAAGCACTGTAAATATAATgtccttgtcttgtttctgtaTGTTTAATTAAAGTCTGCACCCCTGAAT
>TCONS_00041447
CTCTCGTGGGAAGGCAGTCATTTGGCCAGTATTTCTGGTTATGCGCTGTTGTGTATGTTTATTTCAGCAAAGCCTGCAGTGTTCACCATCCAAGATGGCTGCGGGTGAAAGCAATAGCCGATCCTCGTGTCTAAACTTGTCGAATTCGGGGCCGCTCGGCAATGCACCGCCGAGCAACAGCGCCCATTCTTCGCCCGCGAGCAACAGGGGAGCCGGGGGTGCAGCCGGGGGGATCAACCGGAGCGCGGGGAATTCGAACCCTCAGTCGGGCCCGGAGAACGGCGGAGGCACCGAGTCTGCGGTGAGAAGCACGCCGAGCGCGCACAACCCTCCTCGGCAGACGGTCGGCCAGAGCGGAGCCTCTTCAGGCGCTGCGTCAAACATGACGGcgacatcttcatcatcatcatcctcctcctcatcctcatcCGCGTCTACCGCATCCTCCTCCGCCGATGCGTCCGCCGCCGCCGCCGTCTCCTCGCTTCCCAGCAGCCCGGCTTCGGTTTTGGTTTATCGAGAGCCGGTCTACAACTGGCAAGCGACAAAAAGTACAGTGAAAGAAAGATTTGCTCTCGCTGTGGGAAGTGCCGTGTTTGATGCCATGTTCAACGGTGGCATGGCAACAACGTCGACCGAAATTGAACTGCCAGATGTGGAACCGGCTGCATTTCTAGCCCTTCTCAAATTTTTATACTCAGATGAAGTGCAAATTGGACCAGAGACCGTTATGACCACATTATACACAGCCAAAAAGTATGCAGTACCTGCGCTTGAGGCCCACTGCGTTGAATTCTTGAAGAAAAACCTACGCGCTGACAACGCATTTATGTTGCTTACCCAGGCACGGCTTTTTGACGAGCCCCAGCTGGCAAGTCTCTGCTTAGAAAATATCGACAAGAACACAGCTGATGCACTCGCTGCTGAGGGCTTCACGGATGTTGACCTTGATACCCTCGTAGCAGTCCTGGAGAGAGACACACTTGGTGTACGGGAAGTGCGTCTCTTCGGAGCTGCTGTTCGTTGGGCAGAAGCTGAGGCCCAAAGGCAACAATTACAGCCTACACCGGAGAACAAGCGAAGAGTGTTGGGAAAGGCACTTGCCCTTATTCGCTTTCCACTCATGACAATTGAAGAGTTTGCAGCAGGTCCGGCTCAATCTGGTATACTCACAGACCGGGAGGTGGTCAGTCTGTTCCTGCATTTTACCGTCAATCCGAAACCACATGTGGAGTTTATTGACCGGCCCCGCTGTTGCCTCCGGGGGAAAGAGTGCAGCATCACGCGTTTCAGTCAGGTGGAGAGCCGCTGGGGCTACAGTGGAACCAGTGACCGCATCCGGTTTTCTGTGAACCGCAGAATATTTGTGGTGGGATTTGGACTTTATGGCTCTATACATGGTCCAACTGACTATCAGGTCAACATCCAGATCATACACACAGACAGTAACACAGTTCTCGGACAGAACGATACAGGCTTTAGTTGTGACGGAACAGCCAGCACATTCAGAGTGATGTTCAAGGAGCCAGTGGAAATTCTTCCAAGTGTCAATTACATCGCCTGCGCCACCCTGAAGGGACCAGACTCTCATTATGGCACCAAGGGGATGCGTAAAGTCACCCATGAAGCCCCCGCAACTGGTACTAAGACCTGCTTTACATTCTGCTATGCTGCAGGCAACAACAACGGCACTTCTGTAGAAGATGGACAAATCCCAGAGGTCATCTTCTACACATAATGACCGAGCAGAGTCGTCAAACAATCGAGGACTCTTACATTGCATTTTGTGGCCAATTCGCCAGTCTCGGTGTGTAGACTGGTGACCAAATACTGATCTCTCATTTCTAAAGGCTTTCATTGTTAAGCATGAGAATTCAGTTCTTTCAAAGTGTACTTAGGgtacagtcagattttgtttcTACCCAAGTAGCACCTTGTAGTACAACCTTGAAGTCACAACCAGCCAATGTCATTGCTCAGTAATGAACTCATTTCAGAGATCTACTACAGGTACAGCACAGGAACTCGAGGGTAACTCTTCCATTTGTCCGTTTATTTGAAAATGGAATGCTGGTGATTCATTTGGTCCCACCTTTGACCCT
>TCONS_00041448
ATGCGTCCGCCGCCGCCGCCGTCTCCTCGCTTCCCAGCAGCCCGGCTTCGGTTTTGGTTTATCGAGAGCCGGTCTACAACTGGCAAGCGACAAAAAGTACAGTGAAAGAAAGGTTTGCATTTTTGTTTAACAACGAAGTGCTAAGTGACGTCCATTTTTTGGTTGGGAAGGGAATGGGAGTGCAGCGCATTCCAGCGCACAGGTAGGGATGAATAGCGATTTGCTCTCGCTGTGGGAAGTGCCGTGTTTGATGCCATGTTCAACGGTGGCATGGCAACAACGTCGACCGAAATTGAACTGCCAGATGTGGAACCGGCTGCATTTCTAGCCCTTCTCAAATTTTTATACTCAGATGAAGTGCAAATTGGACCAGAGACCGTTATGACCACATTATACACAGCCAAAAAGTATGCAGTACCTGCGCTTGAGGCCCACTGCGTTGAATTCTTGAAGAAAAACCTACGCGCTGACAACGCATTTATGTTGCTTACCCAGGCACGGCTTTTTGACGAGCCCCAGCTGGCAAGTCTCTGCTT
>TCONS_00041449
TTCACCATCCAAGATGGCTGCGGGTGAAAGCAATAGCCGATCCTCGTGTCTAAACTTGTCGAATTCGGGGCCGCTCGGCAATGCACCGCCGAGCAACAGCGCCCATTCTTCGCCCGCGAGCAACAGGGGAGCCGGGGGTGCAGCCGGGGGGATCAACCGGAGCGCGGGGAATTCGAACCCTCAGTCGGGCCCGGAGAACGGCGGAGGCACCGAGTCTGCGGTGAGAAGCACGCCGAGCGCGCACAACCCTCCTCGGCAGACGGTCGGCCAGAGCGGAGCCTCTTCAGGCGCTGCGTCAAACATGACGGcgacatcttcatcatcatcatcctcctcctcatcctcatcCGCGTCTACCGCATCCTCCTCCGCCGATGCGTCCGCCGCCGCCGCCGTCTCCTCGCTTCCCAGCAGCCCGGCTTCGGTTTTGGTTTATCGAGAGCCGGTCTACAACTGGCAAGCGACAAAAAGTACAGTGAAAGAAAGATTTGCTCTCGCTGTGGGAAGTGCCGTGTTTGATGCCATGTTCAACGGTGGCATGGCAACAACGTCGACCGAAATTGAACTGCCAGATGTGGAACCGGCTGCATTTCTAGCCCTTCTC

Function

symbol description
btbd2a Predicted to be involved in neurogenesis. Predicted to be located in cytoplasm. Predicted to be active in P-body and cytosol. Is expressed in brain; oocyte; and ovary. Orthologous to human BTBD2 (BTB domain containing 2).

GO:

id name namespace
GO:0022008 neurogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0000932 P-body cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030829-3 Predicted to be involved in neurogenesis. Predicted to be located in cytoplasm. Predicted to be active in P-body and cytosol. Is expressed in brain; oocyte; and ovary. Orthologous to human BTBD2 (BTB domain containing 2).

Ensembl:

ensembl_id ENSDARG00000042091

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041446 False 2689 mRNA 0.49 9 20159067 20166660
TCONS_00041447 False 2102 mRNA 0.52 9 20159568 20166664
TCONS_00041448 False 536 processed_transcript 0.50 4 20164618 20166209
TCONS_00041449 True 604 processed_transcript 0.61 2 20165683 20166583

Neighbor

gene id symbol gene type direction distance location
XLOC_021097 creb3l3a coding downstream 32837 20112715 ~ 20126230 (-)
XLOC_021096 rxfp3.2b coding downstream 53098 20104706 ~ 20105969 (-)
XLOC_021095 celf5a coding downstream 147463 19665617 ~ 20011604 (-)
XLOC_021094 NA coding downstream 521038 19622740 ~ 19638029 (-)
XLOC_021093 NA coding downstream 556605 19598045 ~ 19602462 (-)
XLOC_021099 mbd3b coding upstream 79923 20246587 ~ 20261899 (-)
XLOC_021100 mbd3b coding upstream 100858 20267522 ~ 20309283 (-)
XLOC_021101 tcf3b coding upstream 145516 20312180 ~ 20342260 (-)
XLOC_021102 zbtb7a coding upstream 205869 20372533 ~ 20386982 (-)
XLOC_021103 map2k2a coding upstream 221957 20388621 ~ 20403194 (-)
XLOC_021090 BX936298.1 non-coding downstream 729143 19429806 ~ 19429924 (-)
XLOC_021089 BX936298.2 non-coding downstream 759132 19397226 ~ 19399935 (-)
XLOC_021088 BX927243.3 non-coding downstream 942879 19215022 ~ 19216188 (-)
XLOC_021106 BX088720.1 non-coding upstream 323777 20490441 ~ 20490557 (-)
XLOC_021107 NA non-coding upstream 355540 20522204 ~ 20547540 (-)
XLOC_021117 CU693455.1 non-coding upstream 952238 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 953232 21119896 ~ 21121096 (-)
XLOC_021124 NA non-coding upstream 1377546 21544210 ~ 21547893 (-)

Expression


Co-expression Network