XLOC_021094


Basic Information

Item Value
gene id XLOC_021094
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19622740 ~ 19638029 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042394
CTTGTTCTTATACAATAGTGGAATGAGGTCAGTCTGGTAAAATTAGCCATCCGCTTCATAGCAGGACTGAATGCCAGGCCAGTGAGAGGGGACGGAGAGTCTCCATTTGAGAGTTGGAGAAACTAGAGAAATAAAGAGACTATGCTTTTTGACAGAGAGTGAGATGAAGTATTGAGAAGAGGAGACGAAGGTTATTCACTAAAAGCCCAGAACTCCTACTCTGTGTAAGGTAAGCAGTGAAGTAAAACAAGATTAACCATTACACCAACTatgagaccaaaaaaaaaaaactgaaactgaataatGATTGTTTTCAAATAGGTTTCCCCAAAGACTCCCCTCATCTGTTATTGGTTGAACAAACGTCTAGGTGACGCCCCAGATTCACACCATTGGTTAAGCTGCTGTTGTCAGACTGgtggatgTTGGAGTGAAAGACAGAAAAGTTGCGAAGTGACAGAAGGAGAGTAGGAGAaggaagaaaaagaggaagaggcATTGGGTTTCCACTGACTGTATGTCTGGGCAGCTCCATATGGTCCTCATTAAGCTGCCAGATTCGGAGAGGCTTTGAAATGTGTCACGCTGCTGCATTAATCTCCCCAAGTTCTCAATTAAAACCCACTGTTCGTAAGCTGAGGAGATGGTGGAGGAATGCTCAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042394 True 664 lncRNA 0.43 3 19622740 19638029

Neighbor

gene id symbol gene type direction distance location
XLOC_021093 NA coding downstream 20278 19598045 ~ 19602462 (-)
XLOC_021092 micos13 coding downstream 69937 19547476 ~ 19552803 (-)
XLOC_021091 si:dkey-78l4.11 coding downstream 117428 19504185 ~ 19505312 (-)
XLOC_021090 BX936298.1 coding downstream 192816 19429806 ~ 19429924 (-)
XLOC_021089 BX936298.2 coding downstream 222805 19397226 ~ 19399935 (-)
XLOC_021095 celf5a coding upstream 27588 19665617 ~ 20011604 (-)
XLOC_021096 rxfp3.2b coding upstream 466677 20104706 ~ 20105969 (-)
XLOC_021097 creb3l3a coding upstream 474686 20112715 ~ 20126230 (-)
XLOC_021098 btbd2a coding upstream 521038 20159067 ~ 20166664 (-)
XLOC_021099 mbd3b coding upstream 608558 20246587 ~ 20261899 (-)
XLOC_021088 BX927243.3 non-coding downstream 406552 19215022 ~ 19216188 (-)
XLOC_021087 BX927243.2 non-coding downstream 415253 19206321 ~ 19207487 (-)
XLOC_021106 BX088720.1 non-coding upstream 852412 20490441 ~ 20490557 (-)
XLOC_021107 NA non-coding upstream 884175 20522204 ~ 20547540 (-)
XLOC_021117 CU693455.1 non-coding upstream 1480873 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 1481867 21119896 ~ 21121096 (-)
XLOC_021124 NA non-coding upstream 1906181 21544210 ~ 21547893 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G165442 NA non-coding NC_053127.1 CM020924.1 15431449 ~ 15433132 (+)
tiger barb (Puntius tetrazona) G151572 NA non-coding NC_056720.1 CM032089.1 10455371 ~ 10455631 (-)