XLOC_021095 (celf5a)


Basic Information

Item Value
gene id XLOC_021095
gene name celf5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19665617 ~ 20011604 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041442
TCCAGCTGACTGCTCGCTCTCtcttagtgtgtgtatgtgtgtgtatatgtgtgtgttgtcattattattatccaGTCTGCTCCCAGCTCAGAATGGCCAGATTCACTCAGACTGAGACAAGAAGGGAGCAGCACCCACAGCCGCCCCATCCCGCTTACTCCAGCCTGCTTTTCACTGGACCCGGGGCAGCACCGACCCAACATCCACTCCTCCTAATCCCGCACCAGCACCAGTACGCTCAGATCCCATTTCCTAAACCCATGAACGGGTCAGAATCCATCTCCATTCATCCGGAGAACGGCACCATGAAAGACCAAGATGCCATAAAACTCTTTATCGGGCAAATACCGCGGAACCTTGAGGAAAAAGACCTGAAACCATTATTCGAACAGTTTGGGAAAATCCACGAATTGACAGTATTAAAGGACCGATACACCGGCATGCACAAAGGCTGCGCGTTCCTCACCTACTGCGCCCGCGAGTCGGCCATCAAAGCCCAGAACGCCCTCCACGAACAGAAGACACTGCCGGGGATGACTCGACCCATCCAGGTGAAGCCAGCTGACAGCGAGAGCCGTGGAGAAGACAGGAAGCTGTTCGTCGGAATGCTGAACAAACAGCAGACGGAGGAGGACGTGTACCGTCTTTTTGAGCCCTACGGAGTCATCGAGGAGTGCACTGTGCTTAGAGGTCCCGACGGAAATAGCAAAGGCTGTGCTTTTGTAAAGTTCTCCACACATGCTGAAGCTCAGTCCGCAATCAGCGCTCTGCACGGCAGTCAAACCATGCCTGGCGCATCGTCCAGCCTGGTGGTCAAGTTTGCCGACACGGACAAGGAGCGCACCATCCGCCGCATGCAGCAGATGGTGGGCCAGTTTGGCATCTTCAACCCTGCCATCGCCCTGCCCTTCAGCACCTACAGCACCTACGCACATGCGCTGATGCAACAGCAGGCGGCCCTCATGGCTGCCAGTCACGGAGGATACCTGGCGCCCAGCGTGGCCTTTCCCACCACCCAGATCCACCAGATGGGGGCGCTCAATATCAACAGCCTGCCGCCCACCCCCATGACCCCGGTGTCGGGTGAGTTTCATCAGACACTGGCAGGCCTCAGCTCACCGCCTGCCAACATCACTACATCAGCCGTCCCCAGCATTGTCACTCCTATCGTCAACGGCTTTACCAGCATCCCTCACCAGCCCAACGGTCACCCTGCAGTGGAGGCCGTGTACACCAATGGTCTGCCCCCATACTCCACCCAAAGCCCCACGGCTGCAGACACCCTACAGCAGGCCTTCACTGGGGTGCAGCAATATACAGCCATCTACCCAGCTACCACACTGACCCCTATTGGCCAAAGCTTGCCACAGCCACCACAAGTcattcagcagcagcagcagagagaAGGACCAGAGGGTTGCAACCTCTTCATCTATCATCTACCACAAGAGTTTGGTGACAATGAGCTTATGCAGATGTTCCTTCCATTCGGTACAGTCATCTCCTCAAAGGTCTTCATGGACAGAGCCACCAACCAGAGCAAGTGTTTCGGCTTTGTGAGCTTTGATAACCCTGCAAGTGCACAAGCTGCAATCCAGGCTATGAATGGCTTTCAGATTGGCATGAAGAGGTTGAAAGTGCAGTTAAAACGGCCGAAGGACGCAAGCCGCCCATACTGACAGGGCCCAACACATACTGG
>TCONS_00041443
CAGCACCCACAGCCGCCCCATCCCGCTTACTCCAGCCTGCTTTTCACTGGACCCGGGGCAGCACCGACCCAACATCCACTCCTCCTAATCCCGCACCAGCACCAGTACGCTCAGATCCCATTTCCTAAACCCATGAACGGGTCAGAATCCATCTCCATTCATCCGGAGAACGGCACCATGAAAGACCAAGATGCCATAAAACTCTTTATCGGGCAAATACCGCGGAACCTTGAGGAAAAAGACCTGAAACCATTATTCGAACAGTTTGGGAAAATCCACGAATTGACAGTATTAAAGGACCGATACACCGGCATGCACAAAGGCTGCGCGTTCCTCACCTACTGCGCCCGCGAGTCGGCCATCAAAGCCCAGAACGCCCTCCACGAACAGAAGACACTGCCGGGGATGACTCGACCCATCCAGGTGAAGCCAGCTGACAGCGAGAGCCGTGGAGACAGGAAGCTGTTCGTCGGAATGCTGAACAAACAGCAGACGGAGGAGGACGTGTACCGTCTTTTTGAGCCCTACGGAGTCATCGAGGAGTGCACTGTGCTTAGAGGTCCCGACGGAAATAGCAAAGGCTGTGCTTTTGTAAAGTTCTCCACACATGCTGAAGCTCAGTCCGCAATCAGCGCTCTGCACGGCAGTCAAACCATGCCTGGCGCATCGTCCAGCCTGGTGGTCAAGTTTGCCGACACGGACAAGGAGCGCACCATCCGCCGCATGCAGCAGATGGTGGGCCAGTTTGGCATCTTCAACCCTGCCATCGCCCTGCCCTTCAGCACCTACAGCACCTACGCACATGCGCTGATGCAACAGCAGGCGGCCCTCATGGCTGCCAGTCACGGAGGATACCTGGCGCCCAGCGTGGCCTTTCCCACCACCCAGATCCACCAGATGGGGGCGCTCAATATCAACAGCCTGCCGCCCACCCCCATGACCCCGGTGTCGGGCCTCAGCTCACCGCCTGCCAACATCACTACATCAGCCGTCCCCAGCATTGTCACTCCTATCGTCAACGGCTTTACCAGCATCCCTCACCAGCCCAACGGTCACCCTGCAGTGGAGGCCGTGTACACCAATGGTCTGCCCCCATACTCCACCCAAAGCCCCACGGCTGCAGACACCCTACAGCAGGCCTTCACTGGGGTGCAGCAATATACAGCCATCTACCCAGCTACCACACTGACCCCTATTGGCCAAAGCTTGCCACAGCCACCACAAGTcattcagcagcagcagcagagagaAGGACCAGAGGGTTGCAACCTCTTCATCTATCATCTACCACAAGAGTTTGGTGACAATGAGCTTATGCAGATGTTCCTTCCATTCGGTACAGTCATCTCCTCAAAGGTCTTCATGGACAGAGCCACCAACCAGAGCAAGTGTTTCGGCTTTGTGAGCTTTGATAACCCTGCAAGTGCACAAGCTGCAATCCAGGCTATGAATGGCTTTCAGATTGGCATGAAGAGGTTGAAAGTGCAGTTAAAACGGCCGAAGGACGCAAGCCGCCCAT

Function

symbol description
celf5a Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; neural tube; and retina. Orthologous to human CELF5 (CUGBP Elav-like family member 5).

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-746 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; neural tube; and retina. Orthologous to human CELF5 (CUGBP Elav-like family member 5).

Ensembl:

ensembl_id ENSDARG00000071375

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041442 False 1699 mRNA 0.55 11 19665617 20011604
TCONS_00041443 True 1519 mRNA 0.56 11 19665642 20011476

Neighbor

gene id symbol gene type direction distance location
XLOC_021094 NA coding downstream 27588 19622740 ~ 19638029 (-)
XLOC_021093 NA coding downstream 63155 19598045 ~ 19602462 (-)
XLOC_021092 micos13 coding downstream 112814 19547476 ~ 19552803 (-)
XLOC_021091 si:dkey-78l4.11 coding downstream 160305 19504185 ~ 19505312 (-)
XLOC_021090 BX936298.1 coding downstream 235693 19429806 ~ 19429924 (-)
XLOC_021096 rxfp3.2b coding upstream 93102 20104706 ~ 20105969 (-)
XLOC_021097 creb3l3a coding upstream 101111 20112715 ~ 20126230 (-)
XLOC_021098 btbd2a coding upstream 147463 20159067 ~ 20166664 (-)
XLOC_021099 mbd3b coding upstream 234983 20246587 ~ 20261899 (-)
XLOC_021100 mbd3b coding upstream 255918 20267522 ~ 20309283 (-)
XLOC_021089 BX936298.2 non-coding downstream 265682 19397226 ~ 19399935 (-)
XLOC_021088 BX927243.3 non-coding downstream 449429 19215022 ~ 19216188 (-)
XLOC_021106 BX088720.1 non-coding upstream 478837 20490441 ~ 20490557 (-)
XLOC_021107 NA non-coding upstream 510600 20522204 ~ 20547540 (-)
XLOC_021117 CU693455.1 non-coding upstream 1107298 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 1108292 21119896 ~ 21121096 (-)
XLOC_021124 NA non-coding upstream 1532606 21544210 ~ 21547893 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_03273527_03314595 CELF5, CELF5A coding CI01000030 null 3273527 ~ 3314595 (-)
bowfin (Amia calva) AMCG00005883 celf5,LOC106956403 coding CM030142.1 CM030142.1 11802432 ~ 11824637 (+)