XLOC_021096 (rxfp3.2b)


Basic Information

Item Value
gene id XLOC_021096
gene name rxfp3.2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20104706 ~ 20105969 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041444
CATGACAACGGACTGAGTGGGAGTCTGAAATGGAGAGGAATAACACCACACAAACTCTGGGAGAATGTGAACACACACTGGAAACCAGTGCAGTGCTGGACAACTGCACAGACGCAGGCTCTGGAAACCTGTCTTTACGTTGCTGGTTGCATTTGTTGACAAAGGAGTCAAGTTCAACACTTCAAGGTGATGGGTCTAGTTTGGCTGTGCGTGTGATGATCGCCCTCATTTATTCAGTGGTTTGTGCTCTGGGACTTGTAGGCAACTCTCTTGCACTCTACCTACTACATTCACGCTACCGGCATAAGCAGTCTTCCATCAATTGTTTTGTGATGGGTTTGGCTCTAACAGACCTGCAGTTTGTCCTAACCCTGCCGTTCTGGGCTGTAGACACCGCGCTGGACTTCCGCTGGCCCTTTGGCAAAGTTATGTGCAAAATAATCAGCTCTGTCACCACTATGAACATGTACGCCAGCGTGTTTTTCCTGACTGCCATGAGCGTGGCAAGGTACTACTCCATTGTGTCCTCGTTGAAGATGCACAGTCGCAGAGCAGCAGCAGCTGCGGCCAAGTGGATCAGCCTGGGCATTTGGGTCGTATCCCTAATAGCGACGCTCCCACATGCCATTTATTCCACAATCGCCCAGGTCGCAACAGACGAGGAACTATGCTTAGTACGCTTCCCCGAAACAGGAAGCTGGGACCCGCAGTTGTTGCTAGGACTGTATCAGTTGCAAAAAGTCCTACTTGGTTTCCTGATCCCATTAGTGGTGATAACCGTATGCTATCTCCTACTATTAAGAATTGTGTTAAGTCGCCGGATTAGTGGTGTGGCTGGCTCTGAAAGTGAGCAGGGCAGACACAAGCGTCGCTCCAAAGTGACCAAATCTGTTGTTGTCGTCGTCCTGTCCTTCTTTTTGTGTTGGCTGCCCAATCAGGCCCTAACTCTGTGGGGCGTCCTCATTAAGTTTGACCTCGTGCCCTTCAGCAAGGCATTCTACAATGCGCAGGCATACGCTTTCCCGCTGACTGTGTGTTTGGCCCACACAAACAGCTGCCTCAACCCGGTGCTTTACTGTTTGATCCGTCGTGAATTTCGTGCCGGACTTAAAGAACTCCTGCTGAGGGCCACACCGTCCTACCGAAGCCTTGCTCGGCTGCTCCCGCGCAAAGCCAAGGTGGCCGAAGCGCCTCCTGTGCTGGTTCTTGTGCAGATGGATGTTTGATTCTTCACTTTGTTTTTTTGATTGACAGGACGAAGCAG

Function

symbol description
rxfp3.2b Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; female organism; immune system; and male organism.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-346 Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; female organism; immune system; and male organism.

Ensembl:

ensembl_id ENSDARG00000061846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041444 True 1264 mRNA 0.51 1 20104706 20105969

Neighbor

gene id symbol gene type direction distance location
XLOC_021095 celf5a coding downstream 93102 19665617 ~ 20011604 (-)
XLOC_021094 NA coding downstream 466677 19622740 ~ 19638029 (-)
XLOC_021093 NA coding downstream 502244 19598045 ~ 19602462 (-)
XLOC_021092 micos13 coding downstream 551903 19547476 ~ 19552803 (-)
XLOC_021091 si:dkey-78l4.11 coding downstream 599394 19504185 ~ 19505312 (-)
XLOC_021097 creb3l3a coding upstream 6746 20112715 ~ 20126230 (-)
XLOC_021098 btbd2a coding upstream 53098 20159067 ~ 20166664 (-)
XLOC_021099 mbd3b coding upstream 140618 20246587 ~ 20261899 (-)
XLOC_021100 mbd3b coding upstream 161553 20267522 ~ 20309283 (-)
XLOC_021101 tcf3b coding upstream 206211 20312180 ~ 20342260 (-)
XLOC_021090 BX936298.1 non-coding downstream 674782 19429806 ~ 19429924 (-)
XLOC_021089 BX936298.2 non-coding downstream 704771 19397226 ~ 19399935 (-)
XLOC_021088 BX927243.3 non-coding downstream 888518 19215022 ~ 19216188 (-)
XLOC_021106 BX088720.1 non-coding upstream 384472 20490441 ~ 20490557 (-)
XLOC_021107 NA non-coding upstream 416235 20522204 ~ 20547540 (-)
XLOC_021117 CU693455.1 non-coding upstream 1012933 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 1013927 21119896 ~ 21121096 (-)
XLOC_021124 NA non-coding upstream 1438241 21544210 ~ 21547893 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G159433 NA non-coding CI01000030 null 3545393 ~ 3547030 (+)