XLOC_021104 (pias4a)


Basic Information

Item Value
gene id XLOC_021104
gene name pias4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20406410 ~ 20419660 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041461
GTGCGAAGATGGCGGCCGAACTGGTAGAAGCGATGAATATGGTGAAGAGTTTTCGGGTGTCTGATCTGCAGACTCTACTGGCCTCGATGGGCCGCAGTAAAAGTGGTTTAAAGCAAGATTTAGTGGGAAGAGCTCTTCGTCTTGTGCAGACCGAATACAGTCCAGAGTTGCTAAAAAACGTCCGGCAGCTCTATGAGACGCGCTTCCCCAAAGCCTCAGCCTGGCTGGCTGCCCGACGCCCAGAGACCGTGGCTGTAAACTACCCTGCTCTCAACTCTTCGCCCAGAGGCACGGGCCAGGGTACAGACTACCTCAACGGGATCCCCAAACCAGCCCCACCTCCTGCAGCCGAAGTCAAACTGGTGCCCCTGCCATTCTACCACAACCTAGAAACATTGCTGCCACCCACAGAACTCGTTGCTCAGAATAGCGAGAAGCTGCAAGAGAGTCAGTGTGTTTTTGATTTAACACCAAACCAAGTGGATCAGATCCGGAACTCTAGTGAACTACGGCCAGGGATGAAATCAGTTCAGGTCGTTCTCAGAATTTGCTACACAGACTCTATCGGCGTTCAGGAGGACCAGTATCCTCCCAATATTGCTGTGAAAGTGAATCAGTCCTACTGTCATGTACCGGGTTACTATCCCTCTAATAAACCGGGTGTGGAGCCGCGGCGGCCCTGTCGACCTGTCAACATCACACCCTGGTTACACCTCTCCACAGTCACTAACAGAGTTACCATCACATGGGGAAACTTTGGGAAGcgATACTCAGTGGCAGTGTACCTAGTGAGAGTGTTCACATCTGGAGAGCTCTTCAACCAGCTGAAGCATTGTTCAGTGGAAAATCCTGATCGTTGTCGTGAAAGAATTCAGGACAAGCTGCGCTTTGATCCTGAAAGTGAGATTGCCACTACAGGACTGCGAGTGTCCCTCATCTGCCCTCTGGTGAAAATGAGACTTGGGGTGCCGTGTCGAGTGCTCACCTGCGCCCACCTGCAATGTTTTGACGCAGTCTTCTTTCTTCAAATGAACGAGAAAAAGCCCACGTGGACCTGCCCTGTATGTGACAAACCAGCTCCTTTTGAGCTCCTTACTATCGACGGGTTACTGTCCGAGATTCTAAAAGAGACACCAGAGGATGTAGAGGAGATTGAATATTTGACTGACGGCTCATGGAGGCCAATCAGAGATGATAAAGAAAAGGAAAGAGAGCGAGAAAACAGCCGCACGCCTGACTATCCAGTGGTGGATATATGTGTTCCTGAGGCGAACGGCCACTCCCCAGCACACAGCGGCACAAACCAGACCGGGAAGTCTGGATCGGGAGGTGCGTCGGCAGGAACCGGCAGCACCAGTGGGGGGTCAGGAGGCGGCACTGTGGTGGATTTGACTCTGGACGACTCGTCAgaggaagaaggaggcggaggaGCCGAGGACAGCGAGGAAACAGACGACAGCCAGGACAGCCCCGCTCCTAAACGGGGCAGATACGACTATGACAAAGACCTGGTCACCGCATACTGAGACCGGCGGGACACATAGACTCATTGGGGAGGGAGGGGGTTGTAGATGGTGGGATCTGAGCCTTGGAAATTCAAGAAACATGTCCCCATGTCCTCTCCTGaatgcatacacactcatgcacgcacacaaacatgcacactcaTGCGCTGCAGACCTCTGGAGCAGGCGGGCATTGCAATGACGAACTCTCAGATGCCCCGTAAAGCCATTCCCAATCATTCACTGCATCTTAATTCTGTATCCTCCCTTTAAAGGCCATGGAAGAGTTAACACCACCTTCAGTTCTGCTCTGTCATCAAACATTTCCTCTCCACTTTTGAGTTTCGACAGGTTTAACCATACTGGGCGTTTAAGATCTTGCCAGTTTTCGTTTTAAATGAAGCTGTTCAGGCATTGAGACGAGCCAcagtatctaaaaaaaaaaaaaaaacttcattccTTCAGTTGTGATCATAGAATCTACTCAGAGGCGCTTTCTGTTAGTCCTTCACATAAGATGTTTATATTAACTGTTCGGTGTGATTGGAGATATCACTGAAGAATTTCCATCTCTCtcacaatattttgtttttatttgtccaCAAAAGTTGACAACCTACCTCAGTCTGACAGCGGACTTGACCAGAGGGTTATTGAAAGGGCGTTGAATCCCTTACATgatgatttttggttgtgttttgttttcgaTCCCTTTGTTTTTCTTGTGCAGCAACACTGGAGAGGCATCAAGCATTGCTCATTGTTTTGTGCTTGCCCATTTAGGCATCATATTAAAAAGCTATTGACTCGAGCAACGAGTTTCTGGTCAAGTCTGTCGGTCAACTTGCGTGTACTGATTGGATGTAGTGCGCAAATCCAGAGGGAATGGAGTTTTGACATCAACGGTCATTGTGAGATGCTAGTCAGCGGGTAAATATTGTATGATAGCTAAGCTAATAATTATAATGTATCGTTTCTGATCATATATTAGGAAATCGCAGGTGTCAATTTAattttgttgcttttatttttttgtcgttTTGGTCTGCAAAGTCAACGCAGACTAATAAATCAGGTTTAGGAGAGGACAAGGTgatgttttcttcttcttcaagACATGACTGTAGTAAATATTAGACCTGATCTTAtctgaaatttattttaaatttcgaCTTGACAGTTTTCGCTTTTTATTTTAGACTAATGGCTGATTTGTTTGAGCCCGTTTTTATTGAGGTTACCCGTTCATTTTCAGCAGATGAAGaggtgttgaatttttttttttcgcgaAATGTTTTGTGGGCTTCGCACAGCCACAGTTCTTAAATATGTCAGCATGTTGCTTTGGTAGAAAACGCTGTGTCCTCACACAGCCTGCTGGTGGACGCACACATTCAGCCATTTGCGGCAGTTTGAACGTAAGTGGGAGGCTTGGTCAGGACTATGCAGACTTGACCTAAACCTCGCAAGCATTAACTTGTGCTTAATGACCAAATACAAATGGCACATCCAGGAGGCTGATCTGCTGAGGATTCAGGGATGACGCGTTAGTTCTACTTGTCTTCATATTTTCTTCTCAGTCAACCCTGACAGGTTCTAGCATCGCGTACAATATTACCTTCACCATCAGGTCACGTAAAGCAGTCAAGGTCTCTGATCTggaaatttaaatgtactttcatGGCATAGGAAGCTCAATGATTTCTTCCCTTGTTCTTCAAAAAAATCTCTGCACTAAACCCActgcaatttttttaaagtttcttctTCAAACGAATCCTGAATTCTGACTTGAATACTCTGTACTGTATCCTATCTGTGTTTGGAAAGTCTCATCAGAAGAATACCGTCATGAAGGGTCAGTTTTAGGATTGTCTTTGGGTCGGCATGGTCTTCCATCCTTTTTTTTCATGATACGCCCAACTTTTTTCacctttttgttttaaatgaattatcTGCGCTGCTGTTAAGCAGCTTCATATTATAAGCCCTTCATGTAGTACGTTCCTACAAATTTGACCAGTTTTGTGATTTTTCACATTTAAGGTAAGGAACTTAATAGACTTCCATCTTTAGATATTCTAGATCGTTCTATTAGAAAAATGTGGATAAAATGTACATTTGCTTACGattaaaaggtaaataaaaggtGATCGACGACAATATATTTCCAGCTCAGAGGAGAAAATGGCCTCTGTGTAGCCAGGTGAGGTTGaagtgggttttttttttgggaatGGAGGCATCCCCTCTTGTTACAGTGCTTAAGATAGCATGGGCAGTGGCTTGCAGTTCTtgatgtaaatgttttgtttgtgtctTTTTATATGTTCATATAAAagccaataaaaataataatattttatcaaGTTTCCAATTGCCTCCAGTTGCTCCAGCAGGTGGGCACAAATGCATTGTTATTGGCAACTCTCAAACTTCATGAGGATAATGTAAATTGGTGACCTTCAACGATGTCCTCAGCTTTAGATTTGATAATACAGGAGCGGATCAGTTGTTCCTCTCTGAAGTGAAATCAAACTGTAAAAGCTCTAACACCTGTCAATTATTGTGTGcaattaaactgatttaaaataaa

Function

symbol description
pias4a Predicted to enable SUMO ligase activity and transcription coregulator activity. Acts upstream of or within negative regulation of type I interferon production and negative regulation of type I interferon-mediated signaling pathway. Located in nucleus. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human PIAS4 (protein inhibitor of activated STAT 4).

GO:

id name namespace
GO:0060339 negative regulation of type I interferon-mediated signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0032480 negative regulation of type I interferon production biological_process
GO:0016925 protein sumoylation biological_process
GO:0005634 nucleus cellular_component
GO:0061665 SUMO ligase activity molecular_function
GO:0019789 SUMO transferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2734 Predicted to enable SUMO ligase activity and transcription coregulator activity. Acts upstream of or within negative regulation of type I interferon production and negative regulation of type I interferon-mediated signaling pathway. Located in nucleus. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human PIAS4 (protein inhibitor of activated STAT 4).

Ensembl:

ensembl_id ENSDARG00000007081

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041461 True 4101 mRNA 0.45 11 20406410 20419660

Neighbor

gene id symbol gene type direction distance location
XLOC_021103 map2k2a coding downstream 3216 20388621 ~ 20403194 (-)
XLOC_021102 zbtb7a coding downstream 19428 20372533 ~ 20386982 (-)
XLOC_021101 tcf3b coding downstream 64150 20312180 ~ 20342260 (-)
XLOC_021100 mbd3b coding downstream 97127 20267522 ~ 20309283 (-)
XLOC_021099 mbd3b coding downstream 144511 20246587 ~ 20261899 (-)
XLOC_021105 atp8b3 coding upstream 53569 20473229 ~ 20515347 (-)
XLOC_021106 BX088720.1 coding upstream 70781 20490441 ~ 20490557 (-)
XLOC_021107 NA coding upstream 102544 20522204 ~ 20547540 (-)
XLOC_021108 lingo3a coding upstream 154202 20573862 ~ 20575679 (-)
XLOC_021109 org coding upstream 270298 20689958 ~ 20695237 (-)
XLOC_021094 NA non-coding downstream 768381 19622740 ~ 19638029 (-)
XLOC_021093 NA non-coding downstream 803948 19598045 ~ 19602462 (-)
XLOC_021090 BX936298.1 non-coding downstream 976486 19429806 ~ 19429924 (-)
XLOC_021089 BX936298.2 non-coding downstream 1006475 19397226 ~ 19399935 (-)
XLOC_021088 BX927243.3 non-coding downstream 1190222 19215022 ~ 19216188 (-)
XLOC_021117 CU693455.1 non-coding upstream 699242 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 700236 21119896 ~ 21121096 (-)
XLOC_021124 NA non-coding upstream 1124550 21544210 ~ 21547893 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_03730577_03740244 PIAS4, PIAS4A coding CI01000030 null 3729814 ~ 3740244 (-)