XLOC_021109 (org)


Basic Information

Item Value
gene id XLOC_021109
gene name org
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20689958 ~ 20695237 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041466
ATGCTTGCTTGTAAATTGGCGGGGAATCGCGTCAGAGAATTGTTGGATTAACCCGGAGATCATCGAGATGACTGACCAGTGCAACTACGCCGTTGAGTCTGAAAACGCTGAGGGTCAAGAGAAGAAAGCTGTGGCGAAGAGAAGAGGAGCCGTGTCCGCCGTCTTCTGTCGGATTTCACAGTTCTGGCCAGTCAGTTTAACAATGCGGGCTCTCCGTGGCTTGTGGTCGCTGTTTGGATTCTCCACACCAGTAAAGTCAGTCTCCCTGGCCAGTGAGGAGAAAAGCAGCTCCCCTAATGAAAGGCAGTGCAGAGCTGTCCGGAAGCGTCTCCACAGGGTCACACGGATCTTGTTGTCCATCCTGCCCCGGCGCATCCAGAGCGCTCTAGGTTATCCAGTCTGTACCAGCATCGGCTGTGCTGTGTCGCCAGagGTGCGCTGCTCCCCTACCAAGCCTTGTGGCAAAGGCAGCAAGAGAAAGCAGGACGACCTGGATGAGGACGAGGAGGTGGAGCAGCAGTCGTGGGTGGAGGCTCTTACTCAGGAGCTGGCAGAGGAAGACCACGTCGCTGATCCCGACTATGAGCCCAGTGCGGTAGAGACGGACAGTGAGGAATACCGGTCCCACAACGACACTGAGAGTGATTTGGAAGTCGAGAAGGGTGTCGTGGTTATCAAAGATTTGGAGACGGTAGTTCCCTCTGAGGCCCAGTGATGGCAGTGTGTACTAATTTTAGTATGCAAATCCAAAGTATTGTGACCGGTTTCAGAATGTTTGTCTTTCTGGCCAGCTCTTTTGATTGCTTCTCGATTTGCTGTTTGTCTTCAGTTGAGTTTTGTagtttttgtatgtattttcattgttgaacTTCCTAATAAAAGTGTTTGTAGTA

Function

symbol description
org Enables mRNA 3'-UTR binding activity. Located in cell cortex. Is expressed in blastodisc; brain; ovary; and primordial germ cell.

GO:

id name namespace
GO:0005938 cell cortex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-584 Enables mRNA 3'-UTR binding activity. Located in cell cortex. Is expressed in blastodisc; brain; ovary; and primordial germ cell.

Ensembl:

ensembl_id ENSDARG00000076474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041466 True 893 mRNA 0.51 6 20689958 20695237

Neighbor

gene id symbol gene type direction distance location
XLOC_021108 lingo3a coding downstream 114279 20573862 ~ 20575679 (-)
XLOC_021107 NA coding downstream 142418 20522204 ~ 20547540 (-)
XLOC_021105 atp8b3 coding downstream 174611 20473229 ~ 20515347 (-)
XLOC_021106 BX088720.1 coding downstream 199401 20490441 ~ 20490557 (-)
XLOC_021104 pias4a coding downstream 270298 20406410 ~ 20419660 (-)
XLOC_021110 oaz1a coding upstream 19387 20714624 ~ 20720427 (-)
XLOC_021111 si:dkey-3k20.1 coding upstream 33826 20729063 ~ 20733822 (-)
XLOC_021112 amh coding upstream 51945 20747182 ~ 20761759 (-)
XLOC_021113 dot1l coding upstream 87678 20782915 ~ 20838011 (-)
XLOC_021114 ell coding upstream 152343 20847580 ~ 20924747 (-)
XLOC_021094 NA non-coding downstream 1051929 19622740 ~ 19638029 (-)
XLOC_021093 NA non-coding downstream 1087496 19598045 ~ 19602462 (-)
XLOC_021090 BX936298.1 non-coding downstream 1260034 19429806 ~ 19429924 (-)
XLOC_021117 CU693455.1 non-coding upstream 423665 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 424659 21119896 ~ 21121096 (-)
XLOC_021124 NA non-coding upstream 848973 21544210 ~ 21547893 (-)
XLOC_021128 BX649295.1 non-coding upstream 1237888 21933125 ~ 21937488 (-)
XLOC_021129 NA non-coding upstream 1255465 21950702 ~ 21955166 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G159490 NA non-coding CI01000030 null 3906081 ~ 3908489 (+)