RNA id: TCONS_00041502


Basic Information

Item Value
RNA id TCONS_00041502
length 3825
RNA type mRNA
GC content 0.53
exon number 33
gene id XLOC_021133
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22172272 ~ 22231720 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATAGCCCGTGTTCGCGGTTCGGTCCGGTCGGACAGGAGGGAAATCATCATGGCTCTGAAGATCGTGAAGGGAAGCATCGATCGGATGTTCGATAAAAACCTGCAGGATTTAGTACGTGGCATTAGGAACCATAAGGAAGATGAGGCCAAATACATCTCTACCTGCATCGATGAGATCAAACAAGAACTCAAACAGGACAACATCGCCGTTAAAGCCAACGCCGTCTGCAAGCTCACCTACTTGCAGATGCTCGGCTATGATGTGAGCTGGGCTGCTTTCAACATTGTGGAGGTCATGAGCTCCTCCAAATTCACTTATAAGCGAATTGGCTACCTTGCTGCGTCCCAATGCTTTCACGAGGGCACTGATGTCATCATGCTGACGACCAATCAGATCCGCAAGGATCTCAGCAGTCCAAACCAATATGACACCGGTGTGGCTCTGACTGGCCTCTCCTGCTTCGTGACCCCTGACCTCGCTCGTGACCTCGCCAATGACATCATGACTTTGATGTCGCACACCAAGCCGTACATTCGCAAGAAGGCCGTGCTGATCATGTACAAAGTGTTTCTGAAGTACCCAGAATCCCTGCGTCCTGCTTTTCCCCGACTCAAGGAGAAGCTGGAGGATCCTGATCCTGGTGTCCAGTCAGCGGCTGTGAACGTCATCTGTGAACTGGCTAGAAGAAATCCTAAGAACTACTTGTCGCTGGCGCCCCTGTTCTTCAAACTCATGACCTCCTCCACCAACAACTGGGTTCTCATCAAGATCATTAAGCTGTTTGGTGCTCTCACTCCTTTGGAGCCTCGTTTGGGAAAGAAGCTGATTGAGCCCCTGACAAACCTCATCCACAGTACCTCGGCCATGTCGCTTCTCTATGAGTGCGTCAACACAGTTATAGCAGTGCTGATCTCGCTGTCTTCTGGGATGCCCAATCACAGTGCAAGCATACAGCTCTGTGTGCAGAAACTGCGAATCCTGATTGAAGACTCGGACCAGAACTTGAAGTACTTGGGTCTTCTGGCCATGTCAAAGATCCTAAAGACGCACCCGAAGTCTGTGCAGTCACACAAAGACCTGATCCTGCAATGTTTGGATGACAAAGATGAGTCCATTCGCTTGAGAGCTCTGGATCTGCTCTACGGCATGGTCTCAAAGAAGAACTTGATGGAGATTGTGAAGAAGCTCATGCTGCATGTGGACAAAGCTGAAGGCACCACTTACAGAGATGAGTTGCTCACCAAGATCATCGACATCTGCAGCCAGAGCAACTACCAGTATATCACTAACTTCGAATGGTACATCAGTATCCTAGTAGAACTGACTCGTCTCGAGGGCACCAGGCACGGCCATCTAATCGCTTCTCAGATGCTGGATGTTGCCATTCGCGTCAAAGCCATCCGAGCCTTCGCTGTGGCTCAGATGGCCACTCTGCTGGACAACGCACACCTGCTGACTGGCAACACACAGCGCAACGGGATCTGCGAGGTTCTCTACGCCGCCGCATGgatctgtggggagtttgcagaGCATCTGGAGGACCCTATGCTGACACTAGAGGCCATGTTGAGACCCAAGGTGGCCACCCTGCCCGGTCACATCCAGGCGGTGTATGTGCAAAACGCTGCCAAGCTGTTTGCAACAGTGCTGCAGAAGCATGAAGGGGAGACGGACAGTCAGGCCGCTCAGGAGACCAGCCAGCTGCTTATCGACAGACTGCCGCTGTTTGTCCAGAGTGCCAACCTAGAAGTGCAAGAGAGGGCATCCTGCATCCTCCAGCTGGTGAAGTACATCCAGAAGCTGCAGCAGAAGAATGTGGAGGTGGCTGAGGAAGTGACGGCCCTCTTTGCTGGAGAGCTCAACCCTGTGGCCCCCAAGGCCCAGAAGAAAGTGCCTATACCAGAAGGTCTGGATTTGGATGCCTGGATCAATGAGCCTCCATCAGAGAGCGAATCAGAGGACGAGAAGCCCAAAGCGGTGTTCGCTAAAGAGGAGCCCAAGCATTCCAGATCGAGACACACTGAGGTGGATGAGAAAGAGCTGGCCAGGAGGAGGGAGGCAAGGAAGCAGGAACAGGCTAACAACCCGTTCTACATCAAGGCCTCGCCATCATCACAGAAGGTTTATGATGCGCCAGGAGTTGAACACATCCCAGTGGTGCAGATTGACCTTAGTGTGCCTCTCAAAGTCCCAGGGATGCCCATGTCTGACCAGTACGTCAAGCTGGAGGAGGAGCGCCGGCAGAAGGAGAAGGCCGAcaagaagaagaaggagaagaagaaaaagagggaAAAGCGAGGGAAAGGGAGGAAGGGGGATTCAGGTCCCGAGAGCGAGGAGGACATCACACCTGCTCACCATGTGGACATAGTCACAGAGGAAATGCCAGAGAATGCCTTACcaagtgatgatgatgataaagatcCCAATGACCCTCATAAAGCTCTGGACATCGATCTGGACAAgccaCTTGCAGACAGTGAGAAGCTTCCAGTGAGGACCCATCGTCCAGAGGTGCTGAAGAGCCCTGCGGAGGACAGAGACGACAACACTATCCCGCAGGagaccaagaagaagagcagCAAGGacaagaaggagaagaagaaagaCAAGGAGAAGGACAGAAAGAGGAGCAAAGAGgacaagaagaaaaagaagaagcacAAAGATGTGGAGGAGGAGCTTCCCGAGTCCCTGCCTGAAGAAGTCGTCCAATCAGAGGAGACCAAAGAGGTGGCAGTTCCGCCCACATCTGCTGATGCCTCGGATCTGGATTTCTGGCTCTCTAGCGCTCCTGTTCCCCCCGTGGCCCAGGTAGTGACGGTGTCCtcgtctgctgctgctgctactgtcGACTCGAGCTCTGCAGCTGCTGCAGAGTCTGAGCCTGAGGAGCTCAAAGACACTGAGCCAGATGACACTAAATCATCTAAACacaagaagaagaagcagaagaaggaaaaggaggagaaggagaagaaaaagaagaagcgtcaccaccaccatcatcatcatcacagtgACGCCGGTGCGGAGGATTCAGTGCAGAATGGCACCGTAGAGGACGAGGAGCCGCTGCCGCCCATGTCCAActactctctgctggctgagaactcCTACATCAAGATGGTCTGTGACATTCAGGGCAACCATCAGGACGAGAGTAAAGTGGTGGTGTCGGTCATCTTCGAGAACAAGAGCGACAGCTTTCTTAAGTCCATGGAGTTCAATGTGCTGGATTCGCTCAACTCCAAACTGCAGCGGCCGGACGGAGCAGGACCCCACGACGGCCTCACCGTCCCCTTCCAGTTGCCGCCAGGGGTGTCAAATGAGGCCCGTTTCGTATTCTCGGTACAGAGTATCGTCATGCCGCAGAAACTGAAGGGAACCCTCACGTTTATAGTTAAGACGGATGAATCCTCCACTCACGAGAAACTGGACTTCAAACTGCACTTTACATGCACGTCATACCTGATCACCACTCCCTGCTACAGTGATGCATATGCAAAGCTGCTGGAGTCGGGCGACCTGAAGGGCAGCTCTCTGCGGCTCGAGGGGGTCAACATGCCCTTCCACCACCTGCTGGCCAGGATCTGCTTCCACCATCACTTCTCTGTTGTGGAGAGGATTGACTCCTGCGCCTCTATGTACAGCAGGTCCATCCAGGGTCACCACGTCTGTTTGCTGGTCAAAAGTTCTGATCAGACCGTCTCCATCGACGCCAAGTGCGACGAGCCATCGCTGCTGGGGAATGTGTTGGATGAGATCAAGCAGACCTTCTCGAAATGCTGACTGTGACCCGCGGCCCACAGCACCCCGAAAC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006896 Golgi to vacuole transport biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0048490 anterograde synaptic vesicle transport biological_process
GO:0048499 synaptic vesicle membrane organization biological_process
GO:0016182 synaptic vesicle budding from endosome biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome biological_process
GO:0015031 protein transport biological_process
GO:0030117 membrane coat cellular_component
GO:0030123 AP-3 adaptor complex cellular_component
GO:0098830 presynaptic endosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0043195 terminal bouton cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-437 Predicted to be involved in several processes, including Golgi to vacuole transport; establishment of protein localization to vacuole; and synaptic vesicle transport. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of AP-3 adaptor complex. Predicted to be active in endosome membrane; presynaptic endosome; and terminal bouton. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome. Orthologous to human AP3D1 (adaptor related protein complex 3 subunit delta 1).

Ensembl:

ensembl_id ENSDART00000160165

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042403 lncRNA downstream 46532 22072007 ~ 22125740 (-) False XLOC_021130
TCONS_00042404 lncRNA downstream 46532 22074569 ~ 22125740 (-) True XLOC_021130
TCONS_00041957 lncRNA downstream 97642 22050297 ~ 22074630 (-) False XLOC_021130
TCONS_00042402 lncRNA downstream 117300 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00042405 lncRNA upstream 110665 22342385 ~ 22523455 (-) True XLOC_021137
TCONS_00042406 lncRNA upstream 538802 22770522 ~ 22788728 (-) True XLOC_021141
TCONS_00042408 lncRNA upstream 593705 22825425 ~ 22861464 (-) False XLOC_021142
TCONS_00042407 lncRNA upstream 593705 22825425 ~ 22861464 (-) False XLOC_021142
TCONS_00042409 lncRNA upstream 593705 22825425 ~ 22861498 (-) False XLOC_021142
TCONS_00041501 mRNA downstream 7934 22141043 ~ 22164338 (-) True XLOC_021132
TCONS_00041500 mRNA downstream 24897 22141040 ~ 22147375 (-) False XLOC_021132
TCONS_00041499 mRNA downstream 41649 22129358 ~ 22130623 (-) True XLOC_021131
TCONS_00041495 mRNA downstream 274993 21852070 ~ 21897279 (-) False XLOC_021127
TCONS_00041497 mRNA downstream 275010 21852113 ~ 21897262 (-) True XLOC_021127
TCONS_00041503 mRNA upstream 2695 22234415 ~ 22242884 (-) False XLOC_021134
TCONS_00041504 mRNA upstream 2948 22234668 ~ 22259175 (-) True XLOC_021134
TCONS_00041505 mRNA upstream 44563 22276283 ~ 22301929 (-) False XLOC_021135
TCONS_00041506 mRNA upstream 45382 22277102 ~ 22301672 (-) True XLOC_021135
TCONS_00041507 mRNA upstream 85135 22316855 ~ 22340688 (-) False XLOC_021136
TCONS_00041498 other downstream 234784 21933125 ~ 21937488 (-) True XLOC_021128
TCONS_00041483 other downstream 996128 21167096 ~ 21176144 (-) False XLOC_021120
TCONS_00041481 other downstream 1053256 21118902 ~ 21119016 (-) True XLOC_021117
TCONS_00041464 other downstream 1681715 20490441 ~ 20490557 (-) True XLOC_021106
TCONS_00041451 other downstream 1910373 20256767 ~ 20261899 (-) True XLOC_021099
TCONS_00041511 other upstream 301866 22533586 ~ 22534463 (-) True XLOC_021139
TCONS_00041513 other upstream 594070 22825790 ~ 22825878 (-) False XLOC_021142
TCONS_00041514 other upstream 712741 22944461 ~ 22944585 (-) True XLOC_021143
TCONS_00041524 other upstream 1265095 23496815 ~ 23496929 (-) True XLOC_021149
TCONS_00041540 other upstream 1520866 23752586 ~ 23754415 (-) True XLOC_021156

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_04662934_04688901.mRNA True 4081 mRNA 0.51 33 CI01000030 4662192 ~ 4688901 (-)
bowfin (Amia calva) AMCG00005849 True 4876 mRNA 0.55 31 CM030142.1 10355036 ~ 10370381 (-)