RNA id: TCONS_00041510


Basic Information

Item Value
RNA id TCONS_00041510
length 4230
RNA type mRNA
GC content 0.51
exon number 17
gene id XLOC_021138
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22345136 ~ 22416337 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGAGATCTGAGCGAGTCCAGAGACCCGAGAAAGACTTTCATTGTTCCTGCCATCAAGCCTTTCGATCATTATGATTTTACCAGAGCTAAAATCAGAGCCAGCCTCACATGGCTAGTGGCCAAAGCCTTCGGTACAGACAGTGTTCCTGAAGAGCTGAACGAGCCCTTCTACAAGGACCAGTATGAGCAGGAGCACCTGAAGCCTCCGGTGGCTGATCTGCTGCTGTCAGCGGAGCTCTACTGCAGAGCTGGAAGTCTGATCCTGAAGAGCGACGCTGTCAAACCTCTCCTGGGCCACGATGCGGTCATCCAGGCTCTGGCGCAGAAGGGCCTTTACGTCACCGACCAGGAGAGACTTGTGACTGAGAGAGACCTGCAGAAGAAACCTATTCAGATGAGCGCCCACCTGGCCATGATCGACACTCTGATGATGGCGTATACAGTGGAGACGGTGAGCGTGGAGAAGGTGATGGCCTGCATGCACCAATACTCCACCGATTATCCAGACGGAGACGTGCCCTACGACACAGAGGATGCCGTCACCAGCTGGATGAATGTGAATGAATACTTGAAGGAAATCATAATGCAGGAGCAAAGGCGGATGGAGGCGCAGAACGCAGAGCCTGTTGAGAATCCAAAGGCGCGTTACAGGAAGGAGCAGGTTCTGCCCAAGTGTTTACCGTGGATCCCTCCGGTGGACAACCTGCTGAAGGACAGCACAGATGGCTGTGCTCTCGCCGCCCTGCTGCACTTCTACTGCCCCACCACCGTCAGCCACATTTGCCTGAACGAGACCATGTCGCTGGCAGACAGTCTGTACAATCTCCAGCTCATCCAGGACTTCTGCAGGGAACAGCTGAACCACTGCTGCCACTTCAGTCTGGAAGACATGCTCTACGCTCACTCTTCCATCAAAaaTAACTATCTTGTGTTTATGGCTGAGCTCTTCTGGTGGTTCGAGGTTGTTAAGCCGCCATTCGTTCAGCCTCAGGTGTTGGACACTGAAGCACCAGCCCCTTCACTGAAAGATCTGCCACCCGTGCCCATCTCTAAAGTCACAAAGAGAAGTTTTATGGAAAGACCTCCTAGTCCAGATAGACCAAGtCTCCCCCTTCGACCTCAACCACAGACTTCAGGCTCAAGTGAGATCAAGAGATCAACCTCAATGTCATTTGTGGAGAGCTTCATGGGCACCTGGCCCAAGGAGAAGAAATCTCCTGCTCAGGGAGTGTCCTTTGAAATCCCATTTGATGAAGACAGTAACAACAAAACAACTACTGGCCGAGGGATGACTCGGTCTGTCAGCACTGAAGGGTTTGGTTTCAAGATGCCCCATGGAACCAGAGGCATAAAGAGAAACCTGTCCTTTCAGCCTGTCAATGGCAAGAACATGGGCATTGAGGAGGAAGGCTGTCCTGACACCCTGTCAGAAAATCATAACAGCCGTCTAAATGGCTCAGGGCCACCTAGCATTGAAGAGGCCCTTGAGATCATCCACAACTCAGAGAAAAAATCACAGAGCCCCAGGGCCCATTTGCCCAGTGAAGGCTTCTTTCTTCACCTCCAGAGTAAAAGTGAATTTAACCCCAAAGCAAAGGATAGTCAGCTAGATTCAGTATCAGAATCATCCAAAGGGGTCGCTAGCACGTCCACCACTGAAGTAGACACTGGCATTCATGTGCGGACAGAGGACATCCAAGAGACACTCGACGAGGACTCATCCCTAAGGGATTGTACTGTCAGCATGGAGTTTGACATGGATCAAGACTTTGAGGCGAGAGCTTCTCGTAGCCAGGGCTCTACAAGCCCATGTCCCAGCAGCCTTAGTGCCAAGTCCCCTGCAGGAAGTATCCCAACTCCTGCTTTTACACCTGGGATTAAGTTGACCAGCTTTGCTGAGCAGAAATTACGCAAACTGAATCCGAACACAGAAACCAAAAGTGCTCCTTTCCAAGGCACAACACCAGATGGGTCAGATCTCGCCATTCCTCACTCCGTCTCTTGGGCTCCTTCTCCTGAAATCAGCCCTGCGCATCAACCGTCCAAGGACCCAGCTCAGGCCATGGCTGCAGAAATGGTGCAGCTGCGCATGAGACTGGAAGAGAAGCGTCGAGCCATTGAGGCCCAAAAGAAGAAAGTGGAGGCAGCCTTTACCCGACACCGTCAAAAGATGGGCCGCAGTGCTTTCCTCACAGTTGTCAAGAGGAAAGGAGTAGATGGAGCGTCACCATTTCAAGAGGACACTCCCACCTCAGAGGAGAGCAAAACACCAGTGGGGACACCCCAACCCGTCAAGTCTCCGCTGAAGTCTGCTGGTGAGGACGGCACATCTGAGGCAGACCTGATGGAATACACACGCTCCATTGAGAAGCTCAATGCTTCTCTAAGCTTCCTGCAGACTGAGATGCAGCGACTGGCCCAACAGCAGGAGGTAATCATGCAGATGCGGGAGCAACAAGCTTGGGTTGTGTCACCACATCAGCCTTCACCACAAAAGCAGGTACGAGAGCTCAGAGGGAGTGGGGCGCGCTCTTCTGGGTCTCCCTCACCTGCAGATTCTCCTAGAGCCACACACCGTTCCCCTACTAATCTAAAGAGGAAGTCTGCCTCTTTCCACTCCAAGACACCAAGAACACCAAGACCCAGTGAGCTAAAGATTGCTCCCTTTAATAGAGTTTTGACCGTCCCACAGTCAGTAGACAGCATACCACGCCTAAGAAGATTCTCCCCATCTCAGCCCATGTCCTGCTCATTTTCATATATGGGAAACGAGAAGAAACCATTATCAACAGCTGACAAAGACATTGAACAAGGTCTTGAGGCATTGTCAATTGAATGTTCTTCTGATACTATCACCTCCCCAACCAAAGAAACCCAACAGGCTGTAACTGATGACACTGACCTGCATGCTAAAAAGGCAGAAGATGTAGAAGAGGAGAGCAGGAAGGACATCAAGCAAACAGAAAAAAGGGAAAAGCTAAAGAAGCCAAAAACTGACATTAAGCCTGCAGTAGAATCTACCGTTTCTGAGGTTTTGTCGCAGATTGTAATGGAGACCGTTATTGTCACTCCCACAGAGCCATTTGACATTGCCCATCAGACCAATAAAAATCTGATTGAGGTCCCACTTTCTGTTTTAAAACCACTGGAAGGAAAGGCATTAGAAGAGGAAGTGGAGAAGGAGGCCTCTGGGGAAAATCAGGATGATGATCAGAAAGCGTGCTGTGGATTCTTCTTCAAGGATGATATGAAGGAAGAGGACAGCATGGCCTTGAAGCGAGCAGCACTTCTGGAGAAAAGGCTGAGAAGAGAACGGGAAAGCCAGCAGAGAAAACAGCAGCTGGAGGCTGAGCATGAGCAGAAGAAAGAGGAGGCTAGGTTAAAAGCAGAGGAAGAACGCctgaagaaagaagaagaaaaggcTCGGCGAGAATTTATAAAGCAGGAATACTTGAGGAGGAAACAACTGAAACTGATGGAGGACATGGACACGCTTGTCAAACCGCGGCCTACAGGAGCAAAGCAAAGAAAACCACGGCCTAAGTCCATCCATAGAGATGTGATGGAGTCCCCTAGGACTCCTGTCAGGGCCACAGCAGGTTCACGACCTCGTGTTTTTTCAGTTTCTAGCCTGTCTCTGGCTTCTCTTGGAGATAATGACAGCGTCAACTCCGATAAGAAAACACCCAGTAGGCCTGACTCAGCAGACGGATGCCTGTCGCCCACCCGCAGCCGTAACGGAGAGAAAGACTGGGAGAACGGTTCAACCACATCATCTCTGACATCCAACACTGAATACACTGGTCCTAAATTATACAAAGAGCCCAGTGCAAAGTCCAACAAGCATATAATTCAGAATGCTTTGGCACATTGCTGTTTGGCTGGCAAAGTCAACGAGGGACAGAAAAACAAGATTTTGGAGGAAATGGAGAAATCAGGGGCCAACAACTTCCTGATCCTGTTTCGGGATTCCGGCTGCCAGTTTCGCTCTCTCTACATGTACTGCCCCGAAGCAGAGGAGATCAACAAGTTGGCCGGCATTGGTCCTAAAACCATCTCGCGCAAGATGATCGACGGCCTCTACAAGTACAACTCAGACAGGAAGCAGTTCAGCCAAATTCCAGCCAAGACCATGTCGGCAAGCGTCGATGCCATAACCATCCACAGCCACCTGTGGCAGACCAAAAAACCAGGAACGCCCAAGAAAGTAGCGGCTGTCAAGTCCTAG

Function

GO:

id name namespace
GO:0007026 negative regulation of microtubule depolymerization biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0031175 neuron projection development biological_process
GO:0005874 microtubule cellular_component
GO:0036449 microtubule minus-end cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0030507 spectrin binding molecular_function
GO:0051011 microtubule minus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3016 Predicted to enable microtubule minus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization and negative regulation of microtubule depolymerization. Predicted to act upstream of or within neuron projection development. Predicted to be located in cytoplasm and microtubule. Predicted to colocalize with microtubule minus-end. Is expressed in external yolk syncytial layer; internal yolk syncytial layer; and yolk syncytial layer. Orthologous to human CAMSAP2 (calmodulin regulated spectrin associated protein family member 2).

Ensembl:

ensembl_id ENSDART00000089569

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042403 lncRNA downstream 219459 22072007 ~ 22125740 (-) False XLOC_021130
TCONS_00042404 lncRNA downstream 219459 22074569 ~ 22125740 (-) True XLOC_021130
TCONS_00041957 lncRNA downstream 270569 22050297 ~ 22074630 (-) False XLOC_021130
TCONS_00042402 lncRNA downstream 290227 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00042406 lncRNA upstream 354185 22770522 ~ 22788728 (-) True XLOC_021141
TCONS_00042408 lncRNA upstream 409088 22825425 ~ 22861464 (-) False XLOC_021142
TCONS_00042407 lncRNA upstream 409088 22825425 ~ 22861464 (-) False XLOC_021142
TCONS_00042409 lncRNA upstream 409088 22825425 ~ 22861498 (-) False XLOC_021142
TCONS_00041958 lncRNA upstream 411290 22827627 ~ 22861493 (-) True XLOC_021142
TCONS_00041507 mRNA downstream 4511 22316855 ~ 22340688 (-) False XLOC_021136
TCONS_00041508 mRNA downstream 7817 22329401 ~ 22337382 (-) True XLOC_021136
TCONS_00041505 mRNA downstream 43270 22276283 ~ 22301929 (-) False XLOC_021135
TCONS_00041506 mRNA downstream 43527 22277102 ~ 22301672 (-) True XLOC_021135
TCONS_00041504 mRNA downstream 86024 22234668 ~ 22259175 (-) True XLOC_021134
TCONS_00041512 mRNA upstream 217670 22634007 ~ 22719440 (-) True XLOC_021140
TCONS_00041515 mRNA upstream 560931 22977268 ~ 23000815 (-) False XLOC_021144
TCONS_00041516 mRNA upstream 561476 22977813 ~ 23006842 (-) False XLOC_021144
TCONS_00041517 mRNA upstream 588556 23004893 ~ 23067859 (-) True XLOC_021144
TCONS_00041518 mRNA upstream 688722 23105059 ~ 23228669 (-) True XLOC_021145
TCONS_00041498 other downstream 407711 21933125 ~ 21937488 (-) True XLOC_021128
TCONS_00041483 other downstream 1169055 21167096 ~ 21176144 (-) False XLOC_021120
TCONS_00041481 other downstream 1226183 21118902 ~ 21119016 (-) True XLOC_021117
TCONS_00041464 other downstream 1854642 20490441 ~ 20490557 (-) True XLOC_021106
TCONS_00041451 other downstream 2083300 20256767 ~ 20261899 (-) True XLOC_021099
TCONS_00041511 other upstream 117249 22533586 ~ 22534463 (-) True XLOC_021139
TCONS_00041513 other upstream 409453 22825790 ~ 22825878 (-) False XLOC_021142
TCONS_00041514 other upstream 528124 22944461 ~ 22944585 (-) True XLOC_021143
TCONS_00041524 other upstream 1080478 23496815 ~ 23496929 (-) True XLOC_021149
TCONS_00041540 other upstream 1336249 23752586 ~ 23754415 (-) True XLOC_021156

Expression Profile

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