Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00041517 |
| length | 771 |
| RNA type | mRNA |
| GC content | 0.37 |
| exon number | 7 |
| gene id | XLOC_021144 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 22977268 ~ 23067859 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006469 | negative regulation of protein kinase activity | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0050731 | positive regulation of peptidyl-tyrosine phosphorylation | biological_process |
| GO:0016311 | dephosphorylation | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016791 | phosphatase activity | molecular_function |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| ko04514 | Cell adhesion molecules |
| ko04660 | T cell receptor signaling pathway |
| ko04666 | Fc gamma R-mediated phagocytosis |
| ko05132 | Salmonella infection |
| ko05340 | Primary immunodeficiency |
| ko01009 | Protein phosphatases and associated proteins |
| ko04090 | CD molecules |
| id | description |
|---|---|
| ZDB-GENE-050208-585 | Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in negative regulation of protein kinase activity; positive regulation of peptidyl-tyrosine phosphorylation; and protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood island; common myeloid progenitor; hematopoietic stem cell; intermediate cell mass of mesoderm; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in hepatitis C; multiple sclerosis; severe combined immunodeficiency; and severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-positive, Nk cell-positive. Orthologous to human PTPRC (protein tyrosine phosphatase receptor type C). |
| ensembl_id | ENSDART00000137873 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042409 | lncRNA | downstream | 143395 | 22825425 ~ 22861498 (-) | False | XLOC_021142 |
| TCONS_00041958 | lncRNA | downstream | 143400 | 22827627 ~ 22861493 (-) | True | XLOC_021142 |
| TCONS_00042408 | lncRNA | downstream | 143429 | 22825425 ~ 22861464 (-) | False | XLOC_021142 |
| TCONS_00042407 | lncRNA | downstream | 143429 | 22825425 ~ 22861464 (-) | False | XLOC_021142 |
| TCONS_00042406 | lncRNA | downstream | 216165 | 22770522 ~ 22788728 (-) | True | XLOC_021141 |
| TCONS_00041528 | lncRNA | upstream | 525198 | 23593057 ~ 23596961 (-) | False | XLOC_021151 |
| TCONS_00042410 | lncRNA | upstream | 527285 | 23595144 ~ 23596038 (-) | True | XLOC_021151 |
| TCONS_00041532 | lncRNA | upstream | 554029 | 23621888 ~ 23622443 (-) | False | XLOC_021152 |
| TCONS_00041533 | lncRNA | upstream | 554224 | 23622083 ~ 23625177 (-) | True | XLOC_021152 |
| TCONS_00041547 | lncRNA | upstream | 712113 | 23779972 ~ 23781079 (-) | False | XLOC_021158 |
| TCONS_00041515 | mRNA | downstream | 4078 | 22977268 ~ 23000815 (-) | False | XLOC_021144 |
| TCONS_00041512 | mRNA | downstream | 285453 | 22634007 ~ 22719440 (-) | True | XLOC_021140 |
| TCONS_00041509 | mRNA | downstream | 588556 | 22345136 ~ 22416337 (-) | False | XLOC_021138 |
| TCONS_00041510 | mRNA | downstream | 588556 | 22345199 ~ 22416337 (-) | True | XLOC_021138 |
| TCONS_00041507 | mRNA | downstream | 664205 | 22316855 ~ 22340688 (-) | False | XLOC_021136 |
| TCONS_00041518 | mRNA | upstream | 37200 | 23105059 ~ 23228669 (-) | True | XLOC_021145 |
| TCONS_00041519 | mRNA | upstream | 170931 | 23238790 ~ 23253252 (-) | False | XLOC_021146 |
| TCONS_00041520 | mRNA | upstream | 178064 | 23245923 ~ 23253481 (-) | True | XLOC_021146 |
| TCONS_00041521 | mRNA | upstream | 196763 | 23264622 ~ 23267893 (-) | True | XLOC_021147 |
| TCONS_00041522 | mRNA | upstream | 425311 | 23493170 ~ 23545307 (-) | False | XLOC_021148 |
| TCONS_00041514 | other | downstream | 60308 | 22944461 ~ 22944585 (-) | True | XLOC_021143 |
| TCONS_00041513 | other | downstream | 179015 | 22825790 ~ 22825878 (-) | False | XLOC_021142 |
| TCONS_00041511 | other | downstream | 470430 | 22533586 ~ 22534463 (-) | True | XLOC_021139 |
| TCONS_00041498 | other | downstream | 1067405 | 21933125 ~ 21937488 (-) | True | XLOC_021128 |
| TCONS_00041483 | other | downstream | 1828749 | 21167096 ~ 21176144 (-) | False | XLOC_021120 |
| TCONS_00041524 | other | upstream | 428956 | 23496815 ~ 23496929 (-) | True | XLOC_021149 |
| TCONS_00041540 | other | upstream | 684727 | 23752586 ~ 23754415 (-) | True | XLOC_021156 |
| TCONS_00041541 | other | upstream | 690096 | 23757955 ~ 23758641 (-) | True | XLOC_021157 |
| TCONS_00041548 | other | upstream | 901221 | 23969080 ~ 23969709 (-) | True | XLOC_021159 |
| TCONS_00041562 | other | upstream | 1298334 | 24366193 ~ 24366272 (-) | True | XLOC_021169 |
