RNA id: TCONS_00041494


Basic Information

Item Value
RNA id TCONS_00041494
length 1692
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_021126
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21794037 ~ 21845685 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCCCAGCCGCCGCTCGATCATTTCCTCCAACCAGagagcagagaaagagagagagagaaacacacacaccagCCCTTCATCACAGCTCATTCCCAACCAGGAAAGCGAAGGAAAGACGCCACAGCAGATCCAGCAAATCCTCCCCTGcttgtttttttcttccatgGCGAAAGCGCGTTAAAGAGTGCGGCGCACATCAGCCTGCTTTATCGGCATCGCAGCGGCGCGGAGCTGCCTGTAGCTGCCGGAGGAGCTTCAGCTAACAAAGAAAAACACGAAAATAAACGTCTGCTGAGCAAACCGCTTCCCTGTTCCTTCACGACCACAAGGCAAGAGCCCGAAGACCAAAACTGACATGATGTTTCCACAATCCAGGCACTCGGCTTCATCACAGCAGCTGAAGTTCACAACGTCAGACTCGTGCGACCGCATCAAGGACGAGTTCCAGTTTCTTCAAGCACAATACCACAgTCTGAAGCTGGAATGTGACAAGCTGGCGAGTGAGAAGTCAGAAATGCAGCGTCATTATATCATGtattacgaGATGTCCTATGGGCTGAACATCGAAATGCACAAGCAGGCAGAGATCGTGAAGAGATTAAATGGGATCTGTGCTCAAGTCTTACCTTACCTGTCTCAAGAGCACCAGCAGCAGGTTCTGGGGGCGATAGAAAGAGCCAAACAGGTCACTCCACCAGAGATGAACTCCATCATACGgCAGCAGCTCCAGGCTCACCAGCTCTCCCAGCTGCAGGGGCTGGCGCTGCCCATGACCCCTCTTCCCCTCGGCCTCAGCCAGCCGGCCGGCCTGCCCGCCGTCACCTCCAGCTCCGGCCTCTTCTCCCTCTCCAGCATCCTGGCATCCCAAGCCCAGCTGGCCAAAGAGGACAAGAGCACACGTGAGACGTCCGACAGCCACCGCGAGGAGGACGGAGACAAATCCGACTAGTCGACGGCCAAAcccaatcatcatcatcatcatcatccagaGCTCAGCGTAGAGCAGAAGCACTTGTTCCCCCCTTTTcttttccttcattttccttctaTCTTTCTATCTCCCCTCTGAATTGCTAAACTCATTCGTTCTGGTTCATTCCACCAGCTTTCTCTCTATGTATTTATACTGATCCTCCTTTTTATTGTGTTATGGATGcttgatttgatttcatttacaCTTCTTTCTTGCCTGCttgtatgtatatatctatatatattgtatatttcttaTGCTCGTTGTGGAAAAACGGTGTGACCGTTAATGGACCATCGACCCTTCGGTAATAATtcctcttttgtttttttctcctttttttttcccttctccCCCGCTCACTCTTTCTTCCTCTTAAAATCTTTCACCTTTTAAAGCTACAATCTACAATAACTGAGTCAAAAGCACTTTGGCCCCAGGCTGTAACTCGGAGACTAAAAGCAACGTTGAATCTAAAAACTTAGCCGCGGCATAATCCATTTAGAGTTTAAAGGATCTGTGTTATTGTAAGGAAGCACGGCTGTTGCATCTATTctaccttaaagggacagttcgacTTAAAAATGAGGGCTTgtgtgttgttccaaacctgtttgacatttcttttttaaatttaatacaataggcgatgttttaaagaatgttcaagCTGCCTCATTTTACAATGAATAGGAACTAACCTTATTACGCTTTAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0070491 repressing transcription factor binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1409 Predicted to enable transcription corepressor activity. Acts upstream of or within dorsal/ventral axis specification. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE5 (TLE family member 5, transcriptional modulator).

Ensembl:

ensembl_id ENSDART00000105564

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041492 lncRNA downstream 116869 21676116 ~ 21677168 (-) False XLOC_021125
TCONS_00042398 lncRNA downstream 246144 21544210 ~ 21547893 (-) True XLOC_021124
TCONS_00042397 lncRNA downstream 246181 21544210 ~ 21547856 (-) False XLOC_021124
TCONS_00042396 lncRNA downstream 672941 21119896 ~ 21121096 (-) True XLOC_021118
TCONS_00041468 lncRNA downstream 1078009 20715057 ~ 20716028 (-) True XLOC_021110
TCONS_00042399 lncRNA upstream 105017 21950702 ~ 21954981 (-) False XLOC_021129
TCONS_00042400 lncRNA upstream 105017 21950702 ~ 21955166 (-) True XLOC_021129
TCONS_00042402 lncRNA upstream 174824 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00042401 lncRNA upstream 174824 22020509 ~ 22054972 (-) False XLOC_021130
TCONS_00041957 lncRNA upstream 204612 22050297 ~ 22074630 (-) False XLOC_021130
TCONS_00041493 mRNA downstream 38071 21694003 ~ 21755966 (-) True XLOC_021125
TCONS_00041491 mRNA downstream 38513 21672656 ~ 21755524 (-) False XLOC_021125
TCONS_00041490 mRNA downstream 117673 21672656 ~ 21676364 (-) False XLOC_021125
TCONS_00041489 mRNA downstream 317201 21475648 ~ 21476836 (-) True XLOC_021123
TCONS_00041487 mRNA downstream 401289 21359164 ~ 21392748 (-) False XLOC_021122
TCONS_00041495 mRNA upstream 6385 21852070 ~ 21897279 (-) False XLOC_021127
TCONS_00041496 mRNA upstream 6428 21852113 ~ 21897203 (-) False XLOC_021127
TCONS_00041497 mRNA upstream 6428 21852113 ~ 21897262 (-) True XLOC_021127
TCONS_00041499 mRNA upstream 283673 22129358 ~ 22130623 (-) True XLOC_021131
TCONS_00041500 mRNA upstream 295355 22141040 ~ 22147375 (-) False XLOC_021132
TCONS_00041483 other downstream 617893 21167096 ~ 21176144 (-) False XLOC_021120
TCONS_00041481 other downstream 675021 21118902 ~ 21119016 (-) True XLOC_021117
TCONS_00041464 other downstream 1303480 20490441 ~ 20490557 (-) True XLOC_021106
TCONS_00041451 other downstream 1532138 20256767 ~ 20261899 (-) True XLOC_021099
TCONS_00041449 other downstream 1627454 20165683 ~ 20166583 (-) True XLOC_021098
TCONS_00041498 other upstream 87440 21933125 ~ 21937488 (-) True XLOC_021128
TCONS_00041511 other upstream 687901 22533586 ~ 22534463 (-) True XLOC_021139
TCONS_00041513 other upstream 980105 22825790 ~ 22825878 (-) False XLOC_021142
TCONS_00041514 other upstream 1098776 22944461 ~ 22944585 (-) True XLOC_021143
TCONS_00041524 other upstream 1651130 23496815 ~ 23496929 (-) True XLOC_021149

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU181300 True 496 TUCP 0.52 2 CI01000030 4431800 ~ 4488526 (+)
bowfin (Amia calva) AMCG00005836 True 621 mRNA 0.59 8 CM030142.1 10701010 ~ 10712559 (+)