XLOC_021126 (tle5)


Basic Information

Item Value
gene id XLOC_021126
gene name tle5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21794037 ~ 21845685 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041494
CCCCCAGCCGCCGCTCGATCATTTCCTCCAACCAGagagcagagaaagagagagagagaaacacacacaccagCCCTTCATCACAGCTCATTCCCAACCAGGAAAGCGAAGGAAAGACGCCACAGCAGATCCAGCAAATCCTCCCCTGcttgtttttttcttccatgGCGAAAGCGCGTTAAAGAGTGCGGCGCACATCAGCCTGCTTTATCGGCATCGCAGCGGCGCGGAGCTGCCTGTAGCTGCCGGAGGAGCTTCAGCTAACAAAGAAAAACACGAAAATAAACGTCTGCTGAGCAAACCGCTTCCCTGTTCCTTCACGACCACAAGGCAAGAGCCCGAAGACCAAAACTGACATGATGTTTCCACAATCCAGGCACTCGGCTTCATCACAGCAGCTGAAGTTCACAACGTCAGACTCGTGCGACCGCATCAAGGACGAGTTCCAGTTTCTTCAAGCACAATACCACAgTCTGAAGCTGGAATGTGACAAGCTGGCGAGTGAGAAGTCAGAAATGCAGCGTCATTATATCATGtattacgaGATGTCCTATGGGCTGAACATCGAAATGCACAAGCAGGCAGAGATCGTGAAGAGATTAAATGGGATCTGTGCTCAAGTCTTACCTTACCTGTCTCAAGAGCACCAGCAGCAGGTTCTGGGGGCGATAGAAAGAGCCAAACAGGTCACTCCACCAGAGATGAACTCCATCATACGgCAGCAGCTCCAGGCTCACCAGCTCTCCCAGCTGCAGGGGCTGGCGCTGCCCATGACCCCTCTTCCCCTCGGCCTCAGCCAGCCGGCCGGCCTGCCCGCCGTCACCTCCAGCTCCGGCCTCTTCTCCCTCTCCAGCATCCTGGCATCCCAAGCCCAGCTGGCCAAAGAGGACAAGAGCACACGTGAGACGTCCGACAGCCACCGCGAGGAGGACGGAGACAAATCCGACTAGTCGACGGCCAAAcccaatcatcatcatcatcatcatccagaGCTCAGCGTAGAGCAGAAGCACTTGTTCCCCCCTTTTcttttccttcattttccttctaTCTTTCTATCTCCCCTCTGAATTGCTAAACTCATTCGTTCTGGTTCATTCCACCAGCTTTCTCTCTATGTATTTATACTGATCCTCCTTTTTATTGTGTTATGGATGcttgatttgatttcatttacaCTTCTTTCTTGCCTGCttgtatgtatatatctatatatattgtatatttcttaTGCTCGTTGTGGAAAAACGGTGTGACCGTTAATGGACCATCGACCCTTCGGTAATAATtcctcttttgtttttttctcctttttttttcccttctccCCCGCTCACTCTTTCTTCCTCTTAAAATCTTTCACCTTTTAAAGCTACAATCTACAATAACTGAGTCAAAAGCACTTTGGCCCCAGGCTGTAACTCGGAGACTAAAAGCAACGTTGAATCTAAAAACTTAGCCGCGGCATAATCCATTTAGAGTTTAAAGGATCTGTGTTATTGTAAGGAAGCACGGCTGTTGCATCTATTctaccttaaagggacagttcgacTTAAAAATGAGGGCTTgtgtgttgttccaaacctgtttgacatttcttttttaaatttaatacaataggcgatgttttaaagaatgttcaagCTGCCTCATTTTACAATGAATAGGAACTAACCTTATTACGCTTTAAAA

Function

symbol description
tle5 Predicted to enable transcription corepressor activity. Acts upstream of or within dorsal/ventral axis specification. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE5 (TLE family member 5, transcriptional modulator).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0070491 repressing transcription factor binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1409 Predicted to enable transcription corepressor activity. Acts upstream of or within dorsal/ventral axis specification. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE5 (TLE family member 5, transcriptional modulator).

Ensembl:

ensembl_id ENSDARG00000021805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041494 True 1692 mRNA 0.47 7 21794037 21845685

Neighbor

gene id symbol gene type direction distance location
XLOC_021125 tle2b coding downstream 38071 21672656 ~ 21755966 (-)
XLOC_021124 NA coding downstream 246144 21544210 ~ 21547893 (-)
XLOC_021123 s1pr3a coding downstream 317201 21475648 ~ 21476836 (-)
XLOC_021122 ankrd24 coding downstream 401289 21359164 ~ 21392748 (-)
XLOC_021121 cks2 coding downstream 479177 21313332 ~ 21314860 (-)
XLOC_021127 gna11a coding upstream 6385 21852070 ~ 21897279 (-)
XLOC_021128 BX649295.1 coding upstream 87440 21933125 ~ 21937488 (-)
XLOC_021129 NA coding upstream 105017 21950702 ~ 21955166 (-)
XLOC_021130 NA coding upstream 174824 22020509 ~ 22125740 (-)
XLOC_021131 C2CD4C coding upstream 283673 22129358 ~ 22130623 (-)
XLOC_021118 NA non-coding downstream 672941 21119896 ~ 21121096 (-)
XLOC_021117 CU693455.1 non-coding downstream 675021 21118902 ~ 21119016 (-)
XLOC_021107 NA non-coding downstream 1246497 20522204 ~ 20547540 (-)
XLOC_021106 BX088720.1 non-coding downstream 1303480 20490441 ~ 20490557 (-)
XLOC_021137 NA non-coding upstream 496700 22342385 ~ 22523455 (-)
XLOC_021139 BX649292.1 non-coding upstream 687901 22533586 ~ 22534463 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G159685 NA unknown CI01000030 null 4431800 ~ 4488526 (+)
bowfin (Amia calva) AMCG00005836 aes,chico,LOC103379965,LOC106574496,LOC107558286 coding CM030142.1 CM030142.1 10701010 ~ 10712559 (+)