XLOC_021121 (cks2)


Basic Information

Item Value
gene id XLOC_021121
gene name cks2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21313332 ~ 21314860 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041485
TCCGTAACGAGCATACGAGACTTATTTCGTATTTCGCATTAAATTAAGACTCAATTTAACATTTATCACACAGGATGTCTTCAGGGAAAAAGCAGATTTACTATTCCGACAAGTATTCTGACGAAGAATACGAGTACAGACATGTTATGCTTCCTAAACAGCTTTCCAAATTGGTGCCTTCCTCGCATTTAATGTCAGAGGAGGAATGGAGAGGACTGGGAGTCCAGCAAAGTCAGGGCTGGATTCATTACATGATCCATAAACCAGAGCCTCACATCCTGCTATTCCGAAGGCCGCTTCCCAAGGAATGAGATTTCAAGATTGTCATCTGAAGTTAAACTACAGTACGTGGTCGGCTGTGACCATGCGTGCATTTCTCTCCATACGTTTTGATTTGTATATAAGTTTTATTATTTGCAGATCTATGGTAATGAAATGTTACTTCTCCTCCCCCTTTCGTCTGGAGATGACGGCAGCAGGAGCTTATAGAGGGGAATGAACGAGTGCTGCCTCCACCTCCCCAAAGTGTTTTCTTTAGATCTACACTGAAGTCATGTAAAATAAGTTGGATGGTGTTCCAGGTCTAGTAATCGCCCCTGTCATAAATAGAAGGAATAGTTTTTGTTGTACGCTAAAGATGCTTTCCATTGCTGAACTGCTGTTGTTTAACATCTCCTACTTGTATCTTGAGCAGTCGACTTTGTGTTGTTCTACATTTGTTGTTgacaaatcaataaatattattttttatta
>TCONS_00041486
AAAACTGAAGCGGCGCCCTTACAGGAAAAACACTGGCACTCCGTAACGAGCATACGAGACTTATTTCGTATTTCGCATTAAATTAAGACTCAATTTAACATTTATCACACAGGATGTCTTCAGGGAAAAAGCAGATTTACTATTCCGACAAGTATTCTGACGAAGAATACGAGTACAGACATGTTATGCTTCCTAAACAGCTTTCCAAATTGGTGCCTTCCTCGCATTTAATGTCAGAGGAGGAATGGAGAGGACTGGGAGTCCAGCAAAGTCAGGGCTGGATTCATTACATGATCCATAAACCAGAGCCTCACATCCTGCTATTCCGAAGGCCGCTTCCCAAGGAATGAGATTTCAAGATTGTCATCTGAAGTTAAACTACAATCTATGGTAATGAAATGTTACTTCTCCTCCCCCTTTCGTCTGGAGATGACGGCAGCAGGAGCTTATAGAGGGGAATGAACGAGTGCTGCCTCCACCTCCCCAAAGTGTTTTCTTTAGATCTACACTGAAGTCATGTAAAATAAGTTGGATGGTGTTCCAGGTCTAGTAATCGCCCCTGTCATAAATAGAAGGAATAGTTTTTGTTGTACGCTAAAGATGCTTTCCATTGCTGAACTGCTGTTGTTTAACATCTCCTACTTGTATCTTGAGCAGTCGACTTTGTGTTGTTCTACATTTGTTGTTgacaaatcaataaatattattttttatta

Function

symbol description
cks2 Predicted to enable several functions, including cyclin-dependent protein serine/threonine kinase activator activity; histone binding activity; and ubiquitin binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within cell division. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Orthologous to human CKS2 (CDC28 protein kinase regulatory subunit 2).

GO:

id name namespace
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0007049 cell cycle biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0051301 cell division biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0042393 histone binding molecular_function
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0043130 ubiquitin binding molecular_function
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-508 Predicted to enable several functions, including cyclin-dependent protein serine/threonine kinase activator activity; histone binding activity; and ubiquitin binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within cell division. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Orthologous to human CKS2 (CDC28 protein kinase regulatory subunit 2).

Ensembl:

ensembl_id ENSDARG00000071410

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041485 False 753 mRNA 0.40 3 21313332 21314821
TCONS_00041486 True 716 mRNA 0.41 4 21313332 21314860

Neighbor

gene id symbol gene type direction distance location
XLOC_021120 rex1bd coding downstream 137063 21167096 ~ 21176269 (-)
XLOC_021119 tmem59l coding downstream 162487 21128113 ~ 21150845 (-)
XLOC_021118 NA coding downstream 192236 21119896 ~ 21121096 (-)
XLOC_021117 CU693455.1 coding downstream 194316 21118902 ~ 21119016 (-)
XLOC_021116 ssbp4 coding downstream 266489 20951211 ~ 21046843 (-)
XLOC_021122 ankrd24 coding upstream 44304 21359164 ~ 21392748 (-)
XLOC_021123 s1pr3a coding upstream 160788 21475648 ~ 21476836 (-)
XLOC_021124 NA coding upstream 229350 21544210 ~ 21547893 (-)
XLOC_021125 tle2b coding upstream 357796 21672656 ~ 21755966 (-)
XLOC_021126 tle5 coding upstream 479177 21794037 ~ 21845685 (-)
XLOC_021107 NA non-coding downstream 765792 20522204 ~ 20547540 (-)
XLOC_021106 BX088720.1 non-coding downstream 822775 20490441 ~ 20490557 (-)
XLOC_021094 NA non-coding downstream 1675303 19622740 ~ 19638029 (-)
XLOC_021128 BX649295.1 non-coding upstream 618265 21933125 ~ 21937488 (-)
XLOC_021129 NA non-coding upstream 635842 21950702 ~ 21955166 (-)
XLOC_021130 NA non-coding upstream 705649 22020509 ~ 22125740 (-)
XLOC_021137 NA non-coding upstream 1027525 22342385 ~ 22523455 (-)

Expression


Co-expression Network