XLOC_021070 (rfxank)


Basic Information

Item Value
gene id XLOC_021070
gene name rfxank
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18160330 ~ 18164835 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041411
GCATTGCGTACATTTAAAGCAGGTGTAATGATCAGTGATTATGGAAAACCGTCATGACGAAAATGCTGCGAACCACTCGACCACTCTGACGAATAAACAGCGCGGGAATGAGGTCACAGTTCGACCGGCCACTTTAGACAACCTCTCAATTCATCAACTCGCAGCCCATGGAGAGATTCCACAACTGGAGATACATTTATCCAAAGACAATTCTCTACTTAACAATCAAGATGAAAGAGGTTTTACACCACTGATGTGGGCTGCTGCATTTGGAGAGATAACGATGGTGGAGTTTCTCCTTCAGAAGgGAGCAGATCCAAAAACACTTGCTAGAGAAAGGGAAAGTGCCCTGTCTCTGGCCAGCGCAGGAGGATTTGCAGATATCGTTAATATTCTTTTACAGCATGGTGTTGATATTGATTCCTATGACTGGaatGGTGGGACCCCACTTCTGTACGCAGTTCGTGGCAATCATATGAAATGTGTCGAAGCCCTGTTAcGATGTGGAGCAGATATTACATTTGAAGCAGACTCTGGATACAGTCCTGTTGCTCTCGCTGTTGCTTTGGGCCACAAAAAAGTTCAAAAACTTCTTGAAGATCACATTCTGAAGCTGTTTCGGGGACCAGTTTCAGTGTCTGAAAACACATGAAGCACTTATGAGACCTTTTAATAACCCTGCG
>TCONS_00041412
AACGAATCAGGAAATAAAAGCAGCATGTATGATCCTACAAGCCTGTGAAGTTTAAGATATTATTTCCACATAAAGTGTTAGAAATCCAAGGTAAGACACTATAATTTTACATTAGAACTGCATATAAAATTGTTACTAAACTTGTTTGTTAAAGATATTTTTCAGCATTGCGTACATTTAAAGCAGGTGTAATGATCAGTGATTATGGAAAACCGTCATGACGAAAATGCTGCGAACCACTCGACCACTCTGACGAATAAACAGCGCGGGAATGAGGTCACAGTTCGACCGGCCACTTTAGACAACCTCTCAATTCATCAACTCGCAGCCCATGGAGAGATTCCACAACTGGAGATACATTTATCCAAAGACAATTCTCTACTTAACAATCAAGATGAAAGAGGTTTTACACCACTGATGTGGGCTGCTGCATTTGGAGAGATAACGATGGTGGAGTTTCTCCTTCAGAAGgGAGCAGATCCAAAAACACTTGCTAGAGAAAGGGAAAGTGCCCTGTCTCTGGCCAGCGCAGGAGGATTTGCAGATATCGTTAATATTCTTTTACAGCATGGTGTTGATATTGATTCCTATGACTGGaatGGTGGGACCCCACTTCTGTACGCAGTTCGTGGCAATCATATGAAATGTGTCGAAGCCCT

Function

symbol description
rfxank Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in MHC class II deficiency and severe combined immunodeficiency. Orthologous to human RFXANK (regulatory factor X associated ankyrin containing protein).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko05152 Tuberculosis
ko05340 Primary immunodeficiency

ZFIN:

id description
ZDB-GENE-050208-596 Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in MHC class II deficiency and severe combined immunodeficiency. Orthologous to human RFXANK (regulatory factor X associated ankyrin containing protein).

Ensembl:

ensembl_id ENSDARG00000016730

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041411 False 683 mRNA 0.45 7 18160330 18164671
TCONS_00041412 True 659 mRNA 0.41 5 18162285 18164835

Neighbor

gene id symbol gene type direction distance location
XLOC_021069 ncanb coding downstream 43695 17864872 ~ 18116635 (-)
XLOC_021068 BX908731.1 coding downstream 316213 17838913 ~ 17844117 (-)
XLOC_021067 NA coding downstream 338882 17818823 ~ 17821448 (-)
XLOC_021066 SBNO2 coding downstream 379117 17691381 ~ 17781213 (-)
XLOC_021065 tjp3 coding downstream 471457 17657612 ~ 17688873 (-)
XLOC_021071 si:ch211-125m10.6 coding upstream 9290 18174125 ~ 18179214 (-)
XLOC_021072 tmem161a coding upstream 66029 18230864 ~ 18241390 (-)
XLOC_021073 NA coding upstream 178477 18343312 ~ 18345189 (-)
XLOC_021074 NA coding upstream 183243 18348078 ~ 18349774 (-)
XLOC_021075 tssk6 coding upstream 221418 18386253 ~ 18387059 (-)
XLOC_021055 NA non-coding downstream 705867 17452425 ~ 17454463 (-)
XLOC_021054 BX649327.1 non-coding downstream 734534 17425678 ~ 17425796 (-)
XLOC_021052 NA non-coding downstream 1095647 17053203 ~ 17064683 (-)
XLOC_021051 NA non-coding downstream 1150830 17004310 ~ 17009500 (-)
XLOC_021077 NA non-coding upstream 377170 18542005 ~ 18546649 (-)
XLOC_021078 NA non-coding upstream 426864 18591699 ~ 18659957 (-)
XLOC_021079 BX649276.1 non-coding upstream 498264 18663099 ~ 18718920 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_02456987_02458132 NA coding CI01000030 null 2456865 ~ 2459588 (-)