G135341 (LOC106582184)


Basic Information

Item Value
gene id G135341
gene name LOC106582184
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34510480 ~ 34511713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU155852
TTTGCGGGTCTGGACTCCCTCTCCACAGTTCTCCTTCAGGTCCAAGTTGCTGACCTTCCATACACTCCAGGGCTCAGCCACCCACACATACTGACTACAGTCACTAATACATGGCACAACCTCATACACCTGGGCCTGGTTGATGTGGTCCAGTTTGGGGCAGGGTCGCCCTCCGTTGTAGGGTTTCTCCCGGAGCCACTTGGAACGCACTTTGACCCCGCTACCACATGACTTGCTGCAGCGGGACCAGTTGGACCACTCGCTGAGCTTACAGTCTGACGGACAGGGGATGATGCA

Function

NR:

description
PREDICTED: thrombospondin type-1 domain-containing protein 7A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155852 True 297 lncRNA 0.40 2 34510480 34511713

Neighbor

gene id symbol gene type direction distance location
LOC110488114 LOC106582161 coding upstream 45887 34432779 ~ 34464593 (+)
LOC110488092 LOC106605261 coding upstream 78256 34423390 ~ 34432224 (+)
LOC110534788 NA coding upstream 104595 34398314 ~ 34405885 (+)
LOC110488078 LOC106605262 coding upstream 113892 34384506 ~ 34396588 (+)
LOC110488056 LOC106605265 coding upstream 144192 34350218 ~ 34366288 (+)
LOC110488146 tmem106b coding downstream 114648 34626361 ~ 34634974 (+)
vwde LOC106605201 coding downstream 132722 34644435 ~ 34646777 (+)
si:dkey-30e9.6 LOC106605205 coding downstream 176396 34687955 ~ 34692286 (+)
arl4aa LOC106605206 coding downstream 180897 34692610 ~ 34695204 (+)
LOC110488257 LOC106605215 coding downstream 449658 34961371 ~ 34964552 (+)
G135316 NA non-coding upstream 40282 34468889 ~ 34470198 (+)
G135295 LOC106582155 non-coding upstream 102003 34408152 ~ 34408477 (+)
G135261 NA non-coding upstream 143436 34366732 ~ 34367044 (+)
G135023 NA non-coding upstream 181844 34276292 ~ 34328636 (+)
ube2e2 LOC106582102 non-coding upstream 193015 34279641 ~ 34317474 (+)
G135380 thsd7a non-coding downstream 42860 34554573 ~ 34555365 (+)
G135671 NA non-coding downstream 226569 34738282 ~ 34738494 (+)
G135685 NA non-coding downstream 244918 34756631 ~ 34757180 (+)
G135861 NA non-coding downstream 383566 34895279 ~ 34895499 (+)
G135865 NA non-coding downstream 389847 34901560 ~ 34901780 (+)
G134735 LOC100136012 other upstream 547822 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 695997 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 1013195 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1341102 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2622908 31834170 ~ 31887572 (+)
G135916 NA other downstream 459927 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 460736 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 473259 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 640047 35151760 ~ 35153650 (+)

Expression


Co-expression Network