G135919 (LOC106605214)


Basic Information

Item Value
gene id G135919
gene name LOC106605214
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34973608 ~ 34973832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU156497
CGTCCGTGTTCATCTGCATCATGACCACCGGCATTGTCTGGTGGCTGATCCTGATGACCCGGGGGCCGGGCTGTCCCTGTCCAGCCTGCTGATTGGACGGGGGAGGCTGTGAGGGGGAAGTCTGTCCCTGACCTGGCTGGTCCGACTGGCCGGGGGTCTGACTGGGCTGGGCCTGTCCgtctgtagctggtctgccatTGGACGCCATTGTGACCGTGGCTCCCA

Function

NR:

description
large proline-rich protein BAG6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156497 True 225 lncRNA 0.65 1 34973608 34973832

Neighbor

gene id symbol gene type direction distance location
LOC110488257 LOC106605215 coding upstream 9056 34961371 ~ 34964552 (+)
arl4aa LOC106605206 coding upstream 278404 34692610 ~ 34695204 (+)
si:dkey-30e9.6 LOC106605205 coding upstream 281322 34687955 ~ 34692286 (+)
vwde LOC106605201 coding upstream 326831 34644435 ~ 34646777 (+)
LOC110488146 tmem106b coding upstream 338634 34626361 ~ 34634974 (+)
LOC110488281 apom coding downstream 11116 34984948 ~ 35000555 (+)
lt-b2 lt-b2 coding downstream 30748 35004580 ~ 35009706 (+)
tnf-alpha tnf-alpha coding downstream 49175 35023007 ~ 35025008 (+)
LOC110533739 ppt2a coding downstream 148971 35122803 ~ 35127514 (+)
LOC110488331 LOC106582353 coding downstream 154138 35127970 ~ 35141476 (+)
G135907 NA non-coding upstream 20188 34953079 ~ 34953420 (+)
G135914 NA non-coding upstream 20753 34952517 ~ 34952855 (+)
G135913 NA non-coding upstream 21097 34952139 ~ 34952511 (+)
G135873 NA non-coding upstream 58717 34913726 ~ 34914891 (+)
G135865 NA non-coding upstream 71828 34901560 ~ 34901780 (+)
G136015 NA non-coding downstream 53354 35027186 ~ 35027532 (+)
G136018 NA non-coding downstream 60073 35033905 ~ 35034771 (+)
G136019 NA non-coding downstream 61187 35035019 ~ 35035261 (+)
G136020 LOC106605218 non-coding downstream 62638 35036470 ~ 35038923 (+)
G136021 LOC106582320 non-coding downstream 68480 35042312 ~ 35048954 (+)
G135920 LOC106605214 other upstream 807 34972449 ~ 34972801 (+)
G135916 NA other upstream 1677 34971640 ~ 34971931 (+)
G134735 LOC100136012 other upstream 1010950 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 1159125 33814033 ~ 33814483 (+)
lypc LOC106584559 other downstream 177928 35151760 ~ 35153650 (+)
LOC110488391 LOC106582385 other downstream 206847 35180650 ~ 35184002 (+)
LOC110488639 LOC106605005 other downstream 811859 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 881317 35855149 ~ 35865269 (+)

Expression


Co-expression Network