RNA id: TU156497



Basic Information


Item Value
RNA id TU156497
length 225
lncRNA type antisense_over
GC content 0.65
exon number 1
gene id G135919
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34973608 ~ 34973832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGTCCGTGTTCATCTGCATCATGACCACCGGCATTGTCTGGTGGCTGATCCTGATGACCCGGGGGCCGGGCTGTCCCTGTCCAGCCTGCTGATTGGACGGGGGAGGCTGTGAGGGGGAAGTCTGTCCCTGACCTGGCTGGTCCGACTGGCCGGGGGTCTGACTGGGCTGGGCCTGTCCgtctgtagctggtctgccatTGGACGCCATTGTGACCGTGGCTCCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156485 lncRNA upstream 20188 34953079 ~ 34953420 (+) True G135907
TU156492 lncRNA upstream 20753 34952517 ~ 34952855 (+) True G135914
TU156491 lncRNA upstream 21097 34952139 ~ 34952511 (+) True G135913
TU156447 lncRNA upstream 58717 34913726 ~ 34914891 (+) True G135873
TU156439 lncRNA upstream 71828 34901560 ~ 34901780 (+) True G135865
TU156600 lncRNA downstream 53354 35027186 ~ 35027532 (+) True G136015
TU156603 lncRNA downstream 60073 35033905 ~ 35034771 (+) True G136018
TU156604 lncRNA downstream 61187 35035019 ~ 35035261 (+) True G136019
TU156605 lncRNA downstream 62638 35036470 ~ 35038923 (+) True G136020
TU156606 lncRNA downstream 68480 35042312 ~ 35048954 (+) True G136021
XM_021560410.2 mRNA upstream 9056 34961371 ~ 34964552 (+) True LOC110488257
XM_021560237.2 mRNA upstream 278404 34692610 ~ 34695204 (+) False arl4aa
XM_021560219.2 mRNA upstream 278404 34693092 ~ 34695204 (+) False arl4aa
XM_021560228.2 mRNA upstream 278404 34693290 ~ 34695204 (+) True arl4aa
XM_036946727.1 mRNA upstream 281322 34688109 ~ 34692286 (+) False si:dkey-30e9.6
XR_002468376.2 mRNA downstream 11116 34984948 ~ 34997219 (+) False LOC110488281
XR_002468377.2 mRNA downstream 11116 34984948 ~ 34997219 (+) False LOC110488281
XR_002468378.2 mRNA downstream 11116 34984948 ~ 34997219 (+) False LOC110488281
XR_002468380.2 mRNA downstream 11116 34984948 ~ 34997219 (+) False LOC110488281
XR_005036519.1 mRNA downstream 11116 34984948 ~ 34997219 (+) False LOC110488281
TU156498 other upstream 807 34972449 ~ 34972801 (+) True G135920
TU156494 other upstream 1677 34971640 ~ 34971931 (+) True G135916
TU156107 other upstream 282662 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU155162 other upstream 1010950 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 1159125 33814033 ~ 33814483 (+) True G133760
TU156464 other downstream 11140 34984972 ~ 34996796 (+) False LOC110488281
TU156467 other downstream 24564 34998396 ~ 35000555 (+) True LOC110488281
TU156680 other downstream 177928 35151760 ~ 35153650 (+) True lypc
TU156686 other downstream 206847 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other downstream 206847 35180679 ~ 35183996 (+) True LOC110488391

Expression Profile