RNA id: TU156604


Basic Information

Item Value
RNA id TU156604
length 243
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G136019
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35035019 ~ 35035261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATGGAGCTGGAAGGACATGAAATGACCCACATTCTTGTTTTTGTGGCCGAGGTTGGGTTCAATCTGGCTAAAGGCAGGAAACGTGGCCGCAATCTCATTGGGCACCGAGCTAGAATTGGCACACCAGGCCAACGTGGGGGCAGTACTACGTGTGATGCCATTTCTGAGAATGAGCACACATTCCACACATTGTGCTCTATAACACCCAACTTCTCCTGGCCTTCCTAAACACACTTTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156603 lncRNA upstream 248 35033905 ~ 35034771 (+) True G136018
TU156600 lncRNA upstream 7487 35027186 ~ 35027532 (+) True G136015
TU156497 lncRNA upstream 61187 34973608 ~ 34973832 (+) True G135919
TU156485 lncRNA upstream 81599 34953079 ~ 34953420 (+) True G135907
TU156492 lncRNA upstream 82164 34952517 ~ 34952855 (+) True G135914
TU156605 lncRNA downstream 1209 35036470 ~ 35038923 (+) True G136020
TU156606 lncRNA downstream 7051 35042312 ~ 35048954 (+) True G136021
TU156638 lncRNA downstream 52018 35087279 ~ 35089332 (+) True G136044
TU156649 lncRNA downstream 66582 35101843 ~ 35102075 (+) True G136055
TU156663 lncRNA downstream 87589 35122850 ~ 35123075 (+) False LOC110533739
NM_001124357.1 mRNA upstream 10011 35023007 ~ 35025008 (+) True tnf-alpha
NM_001124425.1 mRNA upstream 25313 35004580 ~ 35009706 (+) True lt-b2
XR_002468381.2 mRNA upstream 35034 34984948 ~ 34999985 (+) False LOC110488281
XR_005036520.1 mRNA upstream 35034 34984948 ~ 34999985 (+) False LOC110488281
XR_005036519.1 mRNA upstream 37800 34984948 ~ 34997219 (+) False LOC110488281
LOC110533739 mRNA downstream 87542 35122803 ~ 35127514 (+) False LOC110533739
XM_021560547.2 mRNA downstream 92709 35127970 ~ 35141476 (+) False LOC110488331
XM_021560537.2 mRNA downstream 92753 35128014 ~ 35141476 (+) False LOC110488331
XM_021560555.2 mRNA downstream 92919 35128180 ~ 35141476 (+) False LOC110488331
XM_021560571.2 mRNA downstream 93953 35129214 ~ 35141476 (+) True LOC110488331
TU156467 other upstream 34464 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 38223 34984972 ~ 34996796 (+) False LOC110488281
TU156498 other upstream 62218 34972449 ~ 34972801 (+) True G135920
TU156494 other upstream 63088 34971640 ~ 34971931 (+) True G135916
TU156107 other upstream 344073 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156680 other downstream 116499 35151760 ~ 35153650 (+) True lypc
TU156686 other downstream 145418 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other downstream 145418 35180679 ~ 35183996 (+) True LOC110488391
TU157479 other downstream 750430 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 819888 35855149 ~ 35856400 (+) False LOC100653444

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU258421 True 2494 lncRNA 0.46 2 NW_025047772.1 348191 ~ 351045 (-)