G136589 (LOC106582601)


Basic Information

Item Value
gene id G136589
gene name LOC106582601
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35635157 ~ 35636499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU157282
gttgtattcggcgcatgtgacaaataaagttgttTTGATTTTGATGCATAAGCTATAATATGCCTACGGGTGTTTTTAAAatatcatcaccttagaaagctgtccgttaggctttgaaacaacatctaCAATAACCATGTTTTACAATCcgtttcaacctgctgttgaacttctttcttcaaattgatcctcagagtgaggtgagttttaaaagcacgatactgttttgatgaaacgtgtttgatgtgattttcaaatgcatttgcattgatgtcaagagtggttagagggacaacagagccctgaATACCAGGCCATTAGGAACTGATGATCATTAGCAAGTTGGGTACTATCtaagcatgtccagagtgcataacaAGAGATTACCTTAACTCAACTTCACATGGAAATGTATAGCAGTCATGACTCaagactgccggtgtggcggtaatagggtcaccgcaacagccctagcatTTAGGCTTATACATACCAACACCCACCACacccacacagtctctctctctcagccccctcACCTGTGTAGTAGGCTAGCCGCCTGTGGTCCATATCGAACAGgaaccacctcctcctccaggtCTTGACCCGCCCCCCTCGCTTGGTCAAGAAGCCGGCACAGCGGCGAGGGGACATACGCAGGCCCATGCACCCCGCCACCCCGTGACCCAGCGACTCCACGTGGGCCCGCAGGTCAAAGTtcgcagagaggaaaagaggtagGGAGCGCTGAGAAAAAGAATGAGTATAATGTATATTGTTTCACTATAAATATGCAAAATTAAACGGATCAACGTTACAAGGTTAGtgagaaggagacagacagaaagaaagacagattgAGAGAGCAATAaacagggagaaaggagaggttgGAGAAAGGATGTATAGCACTAtagagaacagacagacagacagacagacagacagacagacagacagacagacagacagacagacgtaCCTCAAGGGAGTTGGGGACTGGACTGGTGGTTTTTGGCTGCTCCTCTGGGTCAGGGACTGGCCTGGTCTGGGACTCTACTGGTTCTGCTGCTCCTCGGCCATccagctctctctgcctcttctcctccacaatcacctgccTCCTTTCCTCCTGGATCAACACACATGCTCTATCTCAATTATCCACTTCCTTGTATCCTATCTCCTCGTGTCCTTATGAATCATATTGCCTCCCTTCGAAAGAGGTGCCTCCCTTCAAAGACCTTTTTCAATTCCTTTTTCATTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157282 True 1267 lncRNA 0.47 2 35635157 35636499

Neighbor

gene id symbol gene type direction distance location
LOC110488583 LOC106582465 coding upstream 61997 35567202 ~ 35573160 (+)
LOC110488573 LOC106605190 coding upstream 80918 35548120 ~ 35554239 (+)
LOC110534853 NA coding upstream 94709 35526086 ~ 35540448 (+)
LOC110488566 LOC106605239 coding upstream 122967 35506657 ~ 35512190 (+)
LOC118939546 LOC106582469 coding upstream 137074 35492817 ~ 35498083 (+)
LOC110488622 LOC106605163 coding downstream 107728 35744227 ~ 35751886 (+)
LOC110488629 LOC106605006 coding downstream 123638 35760137 ~ 35777993 (+)
LOC110533750 LOC106584585 coding downstream 147456 35783955 ~ 35785664 (+)
LOC110488639 LOC106605005 coding downstream 149398 35785691 ~ 35788114 (+)
si:ch211-231m23.4 LOC106605003 coding downstream 152562 35789061 ~ 35791241 (+)
G136610 NA non-coding upstream 2749 35631404 ~ 35632408 (+)
G136609 NA non-coding upstream 3757 35630152 ~ 35631400 (+)
G136593 NA non-coding upstream 34195 35600763 ~ 35600962 (+)
G136583 NA non-coding upstream 40317 35594535 ~ 35594840 (+)
G136573 NA non-coding upstream 48877 35586029 ~ 35586280 (+)
G136584 NA non-coding downstream 1614 35638113 ~ 35703928 (+)
G136657 NA non-coding downstream 90740 35727239 ~ 35728312 (+)
G136658 NA non-coding downstream 92734 35729233 ~ 35729521 (+)
G136789 NA non-coding downstream 175235 35811734 ~ 35813460 (+)
LOC100653444 LOC106584591 non-coding downstream 218729 35855149 ~ 35865269 (+)
LOC110488391 LOC106582385 other upstream 451161 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 481507 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 634602 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 662356 34972449 ~ 34972801 (+)
G135916 NA other upstream 663226 34971640 ~ 34971931 (+)
G136994 NA other downstream 346333 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 463112 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 745393 36354883 ~ 36405310 (+)

Expression


Co-expression Network