XLOC_021206 (wdr83)


Basic Information

Item Value
gene id XLOC_021206
gene name wdr83
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 26264543 ~ 26274177 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041623
AGCTTCAGCATACATTCACGAAAGAAACCGCTGTGTTTTCATGCAGTTTGTGGGGTAGTTTTGGGGTTTGTTGTAGTgctgctgtttaaaataaatgacatattATGTATATAGGCTAATTAGCTCTTCTGCGAAGCTGTGGTAATAGTATCAACATGGCGTTTCCACAGCCGCGTCCGCAAGCGCCTCAGTTGCCGCAGCATCTGTGGAGGACTGTAGACTGTCAGCAGGGTGCAGTGAGAGCAGTCCGATTCAACGCCGATGGGAATTATCTGCTAACTTGTGGCAGTGATAAATCTCTGAAACTATGGAGTGTTAGTCGAGGGACTCTGTTGAAGACTTACACCGGTCACGGTTATGAAGTACTTGATGCGGATGGTTCATATGACAACAGTCAGCTGTGCTCCTGCAGCTCTGATAAAACCGTTATTCTGTGGGATGTGGCGTCTGGTCAGGTGACACGCAAACTTCGCGGACATGCTGGGAAAGTGAACTGTGTGCAGTTTAACGAAGAGGCTACTGTGATGCTGTCAGgCTCAATTGATGGGACGGTGCGTTGTTGGGACACAAGATCCAGGCGGATGGAGCCGATCCAGATTCTGGATGAATCACAGGATGGCATCAGCAGCCTAAAAGTGTCAGAACATGAGCTTTTGACTGGGTCTGTGGATGGGAGAGTGAGGCGATATGACCTAAGAATGGGGCAGCTTCAAGTGGATTACATTGGAAGTCCAATCACTTGTGTGTGTTTCAGTAGGGATGGTCAGTGCACACTTAGCTCCAGTTTGGACTCTACGGTGCGTCTGCTGGACAAAAGCACAGGAGAGATGCTTGGAGAGTACTCTGGTCATGTCAACAAAGGCTATAAGCTTGACTGCTGTCTGACTGATAAAGACACGCATGTTTTGAGCTGTTCAGAAGATGGCCATGTTTACTACTGGGATCTGGTGGAGGGCTCCCTGACTTTAAAGCTGCCTGTTGGAAAAGCTGTCGTCCAATCGCTGTCCTTCCACCCAACCGAGCCCCGCCTATTAACTTCTATGGAGGGGCGTGTCCAGGTATGGGGGGCAGAGCCAGAGGATACAGCTGAAAATGAGTCGTGAAAACCTGTGTAAAGTGTTGAACACCAAACAAATGAGCAGGACtcaatttaaaatcattacttttTGATCAGTTTGCTTGTGTTATACTTGTTCTCTGTGTTTatataaaaagtgaataaaatatttt

Function

symbol description
wdr83 Predicted to be located in cytoplasm. Is expressed in lens and solid lens vesicle. Orthologous to human WDR83 (WD repeat domain 83).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-126 Predicted to be located in cytoplasm. Is expressed in lens and solid lens vesicle. Orthologous to human WDR83 (WD repeat domain 83).

Ensembl:

ensembl_id ENSDARG00000041600

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041623 True 1230 mRNA 0.47 9 26264543 26274177

Neighbor

gene id symbol gene type direction distance location
XLOC_021204 c3b.1 coding downstream 28268 26180184 ~ 26236275 (-)
XLOC_021203 c3b.2 coding downstream 89306 26129250 ~ 26175237 (-)
XLOC_021202 pdgfaa coding downstream 164261 26085343 ~ 26100282 (-)
XLOC_021201 pdgfaa coding downstream 258649 25991130 ~ 26005894 (-)
XLOC_021200 AL845363.1 coding downstream 457986 25806441 ~ 25806557 (-)
XLOC_021207 sde2 coding upstream 3441 26277618 ~ 26289549 (-)
XLOC_021208 capn1b coding upstream 24839 26299016 ~ 26323893 (-)
XLOC_021209 capn2b coding upstream 53886 26328063 ~ 26353916 (-)
XLOC_021210 NA coding upstream 85385 26359562 ~ 26369942 (-)
XLOC_021211 NA coding upstream 104846 26379023 ~ 26383952 (-)
XLOC_021199 NA non-coding downstream 520752 25735181 ~ 25743791 (-)
XLOC_021197 NA non-coding downstream 651202 25606015 ~ 25613341 (-)
XLOC_021196 CR769772.2 non-coding downstream 721344 25540945 ~ 25543199 (-)
XLOC_021195 NA non-coding downstream 758400 25505556 ~ 25506143 (-)
XLOC_021217 BX908757.3 non-coding upstream 370057 26644234 ~ 26644968 (-)
XLOC_021218 BX908757.2 non-coding upstream 375328 26649505 ~ 26650144 (-)
XLOC_021219 BX908757.1 non-coding upstream 391781 26665958 ~ 26666940 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_06442356_06446395 MORG1, WDR83 coding CI01000030 null 6442356 ~ 6446395 (-)
bowfin (Amia calva) AMCG00008380 morg1,wdr83,LOC106590526 coding CM030126.1 CM030126.1 247118 ~ 249445 (-)