XLOC_021212 (zgc:194551)


Basic Information

Item Value
gene id XLOC_021212
gene name zgc:194551
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 26483105 ~ 26484268 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041627
TTCCCTTCCAGCTGTGTCTCGTTTGGTCAGATGTCCTGTAAGAAGTGGCTGCTGGTTTGTTTCCTGGTTCCAGGAATTGCTTTAATGATTTATCTCGGCCACAGCCCTTTGACGAAACCCTGGCATCACGCTTCAGTGCAGAGAGAAGCACAAAGACCAAATGCAGACTctccaaacactgaagaagatCCTGGGTTGTACCATGTTGCCTACCCTCGAAATTACAAATTCATCATATACCAACCGGGGATATGTGAAGAGCGAAAACCCTACGTGGTGATTATTGTCCCGGTGCCACCTCATGATTTTAATGCACGCAATGGGATCAGGAACACATGGGCCAGAGAAAAGGTTGTTGAGGGCAAAGAGGTGCTTGTTCTGTTTATTTTGGGCTTACATAGTGGAGATGATGAAGAAACGTTGCAGGAGCAACTGCGTAACGAGAGCCAGCAATACAAAGACCTTCTGCAGAGCAACTTCCAGGACAGCTACAGGAACCTGACCATTAAAACCATGATGATGATGGAGTGGCTCAGCAGGGATTGTCAACAGGCGTCTTACGCAGTAAAAGTGGACGCTGATGTGCTCCTCAATGTGAACAACCTAATCAATATGCTTGTGAGCCTGAACACAGTGCAGAGCAACTACATGACTGGGTTAGTGTGGGATGCTAGTCCTGTCATCAGAGATTCATCCAACAAGTTTTTCCTCCCCTACGATGTTTACCCTAAATACGCATATCCTCCGTATCCTCTGGGCATGTGTTATATCATTTCTTTGGACCTGCCTCAAAAGTTTCTCCAGGAGTCGAAGAAAATTAAGCCTCTATATATTGAAGATGCGTATCTAGGAATGTGTTTGGAGCATTTAGGTATCGCCCCTGTCAAACCTCCAAACATGGATCAGTTTGTGGTAAAGCCACCGCAATACAATCGCTGTTACTTTTCCCGACTCATAGCAGTACTGACTGATAACACAAATCAGATGACCTCTTTTTGGACGGATATTCATTTGACCAGCAGGCCATGCTGAGCTGGGAATCATACTAAATAGTAGGCTATATTGCAATATGATattatgtttgtgtgtctttTATGCCTTTGTGTGTATACGAAACGGTTTGCTTTATCATGAGAAGTATTAATTGTGGTTCCCCTGCACAAG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0030311 poly-N-acetyllactosamine biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4878 Predicted to enable UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GALT5 (beta-1,3-galactosyltransferase 5).

Ensembl:

ensembl_id ENSDARG00000114948

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041627 True 1164 mRNA 0.45 1 26483105 26484268

Neighbor

gene id symbol gene type direction distance location
XLOC_021211 NA coding downstream 99153 26379023 ~ 26383952 (-)
XLOC_021210 NA coding downstream 113163 26359562 ~ 26369942 (-)
XLOC_021209 capn2b coding downstream 129189 26328063 ~ 26353916 (-)
XLOC_021208 capn1b coding downstream 159212 26299016 ~ 26323893 (-)
XLOC_021207 sde2 coding downstream 193556 26277618 ~ 26289549 (-)
XLOC_021213 CR759791.1 coding upstream 29186 26513454 ~ 26514386 (-)
XLOC_021214 zgc:194330 coding upstream 35031 26519299 ~ 26524596 (-)
XLOC_021215 glis2a coding upstream 40492 26524760 ~ 26558166 (-)
XLOC_021216 SRL coding upstream 100828 26585096 ~ 26595027 (-)
XLOC_021217 BX908757.3 coding upstream 159966 26644234 ~ 26644968 (-)
XLOC_021200 AL845363.1 non-coding downstream 676548 25806441 ~ 25806557 (-)
XLOC_021199 NA non-coding downstream 739314 25735181 ~ 25743791 (-)
XLOC_021197 NA non-coding downstream 869764 25606015 ~ 25613341 (-)
XLOC_021218 BX908757.2 non-coding upstream 165237 26649505 ~ 26650144 (-)
XLOC_021219 BX908757.1 non-coding upstream 181690 26665958 ~ 26666940 (-)
XLOC_021220 NA non-coding upstream 303060 26787328 ~ 26791054 (-)
XLOC_021225 CR749748.1 non-coding upstream 581018 27065286 ~ 27089055 (-)

Expression


Co-expression Network