XLOC_021220


Basic Information

Item Value
gene id XLOC_021220
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 26787328 ~ 26791054 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042422
accacgtctttggactgtaggggaaactagagcacccggaggaaacccatgcgaacacggggagtacatgcaaactccacacagaaatgccaaccgactcAGCTGAAAGTCGAActagtgacctccttgctgtgaggcgatcatgccacccactgcaccaccatgatgccTGCATAATAACTTGATATGAATACAGTTCAACGAAAGCTTAATGCACATTATTGTCAGTTAAATAACCCCAACAAGAGTCTGATAAGAgaacttctttaaaataaaacaatttaataacacACAATAACATTAGACACATGTTTTTGATCTGTTCCACACAGTTTATTTAACAATATGGTATATAAGtaagaaataagtttttttaaacCAGTTTATACAGTGATTCCATTCTCTCTTCCTTATATTTATAGTACTTTACTTAATAACTTGCACGATTTACATTACAGGGGAAAGCTGAGCCCCTCTTCAAGTTAGTGTGAGAGGAATGAGGGTCAATAACAGAATCCATTCTGTATTCCAACAAGCAGTCAACCAGTGATCGCCCATTCCCTCCCGCTCAGCTTAGGGGCCCCGCTTTCTCCCACAggctctctcgctcgctcgctctagctctctttatatttatatatctgtATGACAAAATTAGGACAAAAAAGCAACAATTTTCTACATCTGCAAGACAGAACCTCTGGATCCAGACCAGTGAGATGTTGTAAATGTGTACATATCCTCTTGGGGGTCGGTGTAGTACTGTCTGagtgatgcatgtgtgtgtgtgtttgcatacatGCGTATGCACAGTTCCTATCGATACAAACAAATAGTTCTCCTCATATGAACTTCACAATGAGGAAAGGAGATAACTCCAAATgcatgtatgaaaaaaaaaaacgagtgcaACACTAGAATACAATCGCCAGGAAGGATGACAGACAGAGCAGAAAACCCTGGCTCAAACTCCCCGGCATGTTATTTTACAGTCTTCCAACACAAAATGCTGTAAAGTTAGATAAGGTATAAAACAAAAGTATGAATGATATAATGACGTTTCCATTTTCTTACAAAAAAAAGGCATGAAACCAGATCGCCGCTGCCAtccccaaacaaaacaaacaacacatgAACCACACAAGGGTCCGaactgaacaaaaaatatattctttGTGATTTAGATTTCTTTTAAACAACAATTTTCCCTCTTTAAAGGAAGAAATCAgtctcttttcatttttttttaggaaacatcAACATTCCCTAACCTTGTCGacataaatttctttttttcataCATTTCTTCAAACTTTTTTACATGTCAGTACAAAAAAATTGAGAatttagagaaaaaaacaaaacaacagagcCACAAAAAGAGGAAGGGGGAGACTGTGGTGGGTAGAGTCTCCCAGTAAACGCTACAATCCCTCCACAAATTTCTCTAGGGTGTCTCCTGTTGTGTCTCCCACCATGTTTAAGTCACTGGGCAGCCCTCCCCGATTGGGCGTATTGAGCTGCGGGAGCATGGCACTCTGCTCGGGCGTACCCAGATGTCCTTGATCCATGGAGCCAGGCATGGGTGTTGTCAGACCAGGGTGTGGTGACCCCGTATGGGATGGCACATGTTGGGGTGACGGCTGAGGCTGAACGTGTGGGGAAGGGCTGGAATGTGGAGGAGGCTGCTGTGACGGAGGTCTGGGTGATTGTACGGGGCCTGGCGAACACACCTGATTACTGAGTGCATTAGCCATGGGTTGGCCGGGTAGGTGTGCGCCCTGCGGCTGGCCCGAGAGAAGGTGAGTTTGTGGGCTCATGGGGCTCGGTTGTGCCTGTGAGCCCATGGGAGGCTTGAGGACAACCTGTTGTTGCGGAAGCTGCTGTTGCTGTAGTAGGAGATTGTTGCGCTGGTGCAAAAGGTTGGGTGTGCCATCCATAGCCATCTGGGCCATTGGGGGAAGCTGGCCCATGGGTCCACCTGTTCCCTGCATGGCcaactgctgctgctgcatcCGGAGTTGCGTGTAGTTGGTAGCAGTTCCTTGTGCCTGTGGGAACTGGCCATGAGCTTGAGGCATCCCTCCctgctgctgttgttgctgctgctGGGCCATGCCAGGTCGTGGCACAGCCTGCATAGCTGCCATGTTCTGCATGGCTGGCTGCGCTGCGTGTATGCCCTGCTGTGGCTGCTGCTGCTGGGGCTGGCTGGCGTGGTACTTTGCAGTTCTCTGTTTGATGAAGGCTGCCATGAGTTGCGGGTTCGATTTGAGGATGTTCAACACTTGCTGCTGTTGTTGGGGTGAGCTGGGTGACTTGAGGGTGCGTAGCAGATCCTGTAAGGCATTAGGAGCGATGCCTGCGGCTCTCTGGGGTGCTTGCGGTCGAGGGCCCTGCGTGGGCACCATCATGCGTGGCTGGGCAACTTGCTGGGGCATTGCGGGTCTCTGTATAGGCAAGGTCGACTGAGGGCCCTGTGGGGTCTGTTGAGCGACCTGCTGCTGAGCTGCTGGCATACTAGGCTGAGCGCCTCCAGGCCACTGTCCTTGCGGCATGGGCTGCATGACCTGCTGCCCGCGTGGCCCAACAAGCTGCATGGGTGGTTGCATTGCACCTGGCATGCGCGGCTGCTGGTGGTTCATGGGAAGGCCATTCATGGTCATGCGATAGTTCTGTTGAGCCTGCGCCACCATCTCTATGTGCCGTGCCATCTTGACTGCCATAGGTggaggctgctgctgctgctgcggaGGTTGTTGCGGCGGAGGCTGCTGCTGGGGTGGCTGTGGGAGTGGAGACTGCTGCTGATGTAGTGGGGACGCCTGTGGGCCGGGTTTGCCCTGTGAGGCTTGAGGAAGGGGTTGTCCATTGCGTGGGGTATTGGGATAGGTTGGTGACATTACGACAGCGTTTGGCGTAGTCGGCTGATTGGGCAGCGGTTGCGGCGTTTGAGGCGTGTTGGGTTGCTGATGCGAGGTGGGTGTGCTGGGGGCTGTGGATGCGGGTGGTGACGGTAGGCTTTGAGGCATGGCTCGACCCTGCATAGTGGCCATGCGTCTCCGCATCATCTGCGCCTGCTGCAGCCGGTGTTGTAGCTGCTGCTGCCGCAGTTTGTGCTTGATATTGAGGCAGAAGGGCACAGGACACTTGTTCTCCTGGCAGTGCTTGGCATGATAGCAGCAGAGAGCAATGAGCTGCTTGCACACCGGACAGCCACCGTTTGTCTTGCGCTTGCAGCCCTTGGTGTGCTGCACCACACGCTTCATCTTCTGGCAAGATGGCAAAGAGCAGTTGGCGTTGCGGCACTGGCAGGCATGCACCAGAGACTGGATGCAACGCTGGATGCTTAGACGCCGGCTCTCTTGAGGACTCTTGGAGGCCTCACCACTTTGGCTACTGCTGTCATCATCCAGACCCAGACCCCACTTAACCATCTGGTGCTCATGTCCCTTAGCGTTGTAGCAATTAATACACAGGTCAAAGTCCTGAGGAAAGATAAAAAAAACCATGGTCAAGGGAGGCATGACAGacatatgaaatgtataattagATAGTTATGTTTTAAAGGCAATCAATGAAATTAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042422 True 3589 lncRNA 0.50 2 26787328 26791054

Neighbor

gene id symbol gene type direction distance location
XLOC_021219 BX908757.1 coding downstream 120388 26665958 ~ 26666940 (-)
XLOC_021218 BX908757.2 coding downstream 137184 26649505 ~ 26650144 (-)
XLOC_021217 BX908757.3 coding downstream 142360 26644234 ~ 26644968 (-)
XLOC_021216 SRL coding downstream 192301 26585096 ~ 26595027 (-)
XLOC_021215 glis2a coding downstream 229162 26524760 ~ 26558166 (-)
XLOC_021221 si:dkey-44g23.5 coding upstream 31278 26822332 ~ 26834043 (-)
XLOC_021222 gde1 coding upstream 48187 26839241 ~ 26852516 (-)
XLOC_021223 hmox2a coding upstream 62200 26853254 ~ 26865361 (-)
XLOC_021224 cxcl12b coding upstream 138500 26929554 ~ 26945493 (-)
XLOC_021225 CR749748.1 coding upstream 274232 27065286 ~ 27089055 (-)
XLOC_021211 NA non-coding downstream 403376 26379023 ~ 26383952 (-)
XLOC_021210 NA non-coding downstream 417386 26359562 ~ 26369942 (-)
XLOC_021227 BX927308.2 non-coding upstream 326714 27117768 ~ 27118361 (-)
XLOC_021230 BX927308.1 non-coding upstream 446980 27238034 ~ 27239175 (-)
XLOC_021232 NA non-coding upstream 708218 27499272 ~ 27564155 (-)
XLOC_021233 CR388079.2 non-coding upstream 738578 27529632 ~ 27532362 (-)

Expression


Co-expression Network