XLOC_021233 (CR388079.2)


Basic Information

Item Value
gene id XLOC_021233
gene name CR388079.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 27529632 ~ 27532362 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041651
AGTCATTGACAAGGACATCGTCATGGACCAGTGGTGAAGAGCCGCGAGAGAAGGTTAATTTTTCGAAAGGAGAAGTCCACTATTTCAGCTTCATCATTCAGcctggaaactgaacTGCTTCATAAAACTTGTGCTTGAAAAGTGTCATGGGACCCATATTAAGTTTCCAAATTTGATCTGCTGCACACAAGTAGCTTTGAAGAAGAAGGATCCCAGCTTAAAGAAAaacatgtcacatccataattgtTTGACATCATCTTCAAGCACACCTGGATTCCTTGTTGCAATGTcttcaaaacaaatgtaaaaatgaaagtaTTTCAGTGGTGAGCTCATATGATGGGATCAAAAGGAAGTGAACTGGACTCTGAGGGACTTAACACAAGattgtgatggacctagaATGCGACATCGTTTACGaataagtcaagaaccaaatgaaACACTATTTTCCAGAGCGCAGATTATGGAGGGGTCTGCAAAACTAATGGAGCAGTTTCTTCTTCTTGGAGTGCCACAGCTTAAATCCAAAGATCCTAACAGCTCTCCTGATTCCGTCAAGGCTTGAAGTGTCAGCATTACGATGGCCAACACTCGCTCACTATCCTCACTATTACTGCTCCCTCATTTATCAGaggcaccacagtagaatgaattaGCAATTACTCTtcactttccagccgcaacccagcactgggaaacacccatacaccataCGCCTGCACACATTCACTTACTATggccaattcaccaataccaaacgcatgcctttggactgtgggggcaactggagcacccagaggaaacccacacaaacactgggagaacttgcaaacttcacacagaaacacca
>TCONS_00041652
AGTCATTGACAAGGACATCGTCATGGACCAGTGGTGAAGAGCCGCGAGAGAAGGTTAATTTTTCGAAAGGAGAAGTCCACTATTTCAGCTTCATCATTCAGcctggaaactgaacTGCTTCATAAAACTTGTGCTTGAAAAGTGTCATGGGACCCATATTAAGTTTCCAAATTTGATCTGCTGCACACAAGTAGCTTTGAAGAAGAAGGATCCCAGCTTAAAGAAAaacatgtcacatccataattgtTTGACATCATCTTCAAGCACACCTGGATTCCTTGTTGCAATGTcttcaaaacaaatgtaaaaatgaaagtaTTTCAGTGGTGAGCTCATATGATGGGATCAAAAGGAAGTGAACTGGACTCTGAGGGACTTAACACAAGGTAAGTTCATTTCAATACATTTCATGTCAAGattaattctgtgatttaaatttgtatttacacACTCTACAAATGCTGTCTTCCTacctcagattgtgatggacctagaATGCGACATCGTTTACGaataagtcaagaaccaaatgaaACACTATTTTCCAGAGCGCAGATTAT
>TCONS_00041653
TGTGTTATTTGAAGGCGAGCTTCGAGAGAGCGTGAATGAAGCATGTGCATGTTACTTTAAAATTAACTAGATTTGTGCCGATTTCATTGTGTTTTTCGTGTtgtttttagctccaaccttgaaCAAACGCTCACTTTTAGCTTGGTTCGTGTGTGTTTTATCAGTgattgagctaaactctgcaaagTAGTGGACATTACTGCCCGCTTTTGAGAGTTTCCCGCTAGTCTGCATAAAACCGCAAGATAGCAGTGCACCGCTCGTGCCCGCACAGGCAGATTTGTGCCCGAGTCTGTGCACGCGCGGGAGGCCAGTCACGGTGGCAAgttctccctatggccagtccgcccctgaatattattgaaacctttaaaaagccaaacatattttaacaatccatagatgaaagatcaggtctcatttataaaagacacaaaaatgcagactaaatgtattgtgaaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtgcaaaataagtttaaaataaatattttaatgtatattttatctttcttcaaacagcctggaaactgaacTGCTTCATAAAACTTGTGCTTGAAAAGTGTCATGGGACCCATATTAAGTTTCCAAATTTGATCTGCTGCACACAAGTAGCTTTGAAGAAGAAGGATCCCAGCTTAAAGAAAaacatgtcacatccataattgtTTGACAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095006

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041651 False 854 processed_transcript 0.43 6 27529632 27532362
TCONS_00041652 False 561 processed_transcript 0.38 4 27530635 27532362
TCONS_00041653 True 748 processed_transcript 0.36 2 27531133 27531978

Neighbor

gene id symbol gene type direction distance location
XLOC_021229 si:dkey-208m12.2 coding downstream 167193 27189979 ~ 27362439 (-)
XLOC_021231 si:dkey-208m12.3 coding downstream 232743 27295601 ~ 27296889 (-)
XLOC_021230 BX927308.1 coding downstream 290457 27238034 ~ 27239175 (-)
XLOC_021228 si:dkey-16m19.1 coding downstream 393181 27134809 ~ 27136451 (-)
XLOC_021227 BX927308.2 coding downstream 411271 27117768 ~ 27118361 (-)
XLOC_021234 NA coding upstream 61621 27593983 ~ 27598833 (-)
XLOC_021235 CR388079.3 coding upstream 67413 27599775 ~ 27622854 (-)
XLOC_021236 CR547131.1 coding upstream 171270 27703632 ~ 27709692 (-)
XLOC_021237 wu:fu71h07 coding upstream 546565 28078927 ~ 28079678 (-)
XLOC_021238 si:dkey-222p3.1 coding upstream 675606 28207968 ~ 28226948 (-)
XLOC_021225 CR749748.1 non-coding downstream 440577 27065286 ~ 27089055 (-)
XLOC_021220 NA non-coding downstream 738578 26787328 ~ 26791054 (-)
XLOC_021219 BX908757.1 non-coding downstream 862692 26665958 ~ 26666940 (-)
XLOC_021242 NA non-coding upstream 1096284 28628646 ~ 28631937 (-)
XLOC_021246 dre-mir-217 non-coding upstream 1247353 28779715 ~ 28779812 (-)
XLOC_021247 dre-mir-216a non-coding upstream 1247587 28779949 ~ 28780037 (-)
XLOC_021248 dre-mir-216b non-coding upstream 1247895 28780257 ~ 28780333 (-)

Expression


Co-expression Network