RNA id: TCONS_00041652


Basic Information

Item Value
RNA id TCONS_00041652
length 561
RNA type processed_transcript
GC content 0.38
exon number 4
gene id XLOC_021233
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 27529632 ~ 27532362 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCATTGACAAGGACATCGTCATGGACCAGTGGTGAAGAGCCGCGAGAGAAGGTTAATTTTTCGAAAGGAGAAGTCCACTATTTCAGCTTCATCATTCAGcctggaaactgaacTGCTTCATAAAACTTGTGCTTGAAAAGTGTCATGGGACCCATATTAAGTTTCCAAATTTGATCTGCTGCACACAAGTAGCTTTGAAGAAGAAGGATCCCAGCTTAAAGAAAaacatgtcacatccataattgtTTGACATCATCTTCAAGCACACCTGGATTCCTTGTTGCAATGTcttcaaaacaaatgtaaaaatgaaagtaTTTCAGTGGTGAGCTCATATGATGGGATCAAAAGGAAGTGAACTGGACTCTGAGGGACTTAACACAAGGTAAGTTCATTTCAATACATTTCATGTCAAGattaattctgtgatttaaatttgtatttacacACTCTACAAATGCTGTCTTCCTacctcagattgtgatggacctagaATGCGACATCGTTTACGaataagtcaagaaccaaatgaaACACTATTTTCCAGAGCGCAGATTAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140393

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042424 lncRNA downstream 441580 27070996 ~ 27089055 (-) True XLOC_021225
TCONS_00042423 lncRNA downstream 444295 27070996 ~ 27086340 (-) False XLOC_021225
TCONS_00042422 lncRNA downstream 739581 26787328 ~ 26791054 (-) True XLOC_021220
TCONS_00041634 lncRNA downstream 863695 26665958 ~ 26666940 (-) True XLOC_021219
TCONS_00041973 lncRNA downstream 1146683 26379023 ~ 26383952 (-) True XLOC_021211
TCONS_00041975 lncRNA upstream 10128 27542490 ~ 27564155 (-) True XLOC_021232
TCONS_00041654 lncRNA upstream 61621 27593983 ~ 27597355 (-) False XLOC_021234
TCONS_00042425 lncRNA upstream 61621 27593983 ~ 27598833 (-) True XLOC_021234
TCONS_00042426 lncRNA upstream 1092503 28624865 ~ 28625408 (-) True XLOC_021241
TCONS_00041976 lncRNA upstream 1096284 28628646 ~ 28631937 (-) True XLOC_021242
TCONS_00041647 mRNA downstream 168196 27190069 ~ 27362439 (-) False XLOC_021229
TCONS_00041648 mRNA downstream 168196 27190453 ~ 27362439 (-) True XLOC_021229
TCONS_00041650 mRNA downstream 233746 27295601 ~ 27296889 (-) True XLOC_021231
TCONS_00041646 mRNA downstream 334300 27189979 ~ 27196335 (-) False XLOC_021229
TCONS_00041645 mRNA downstream 394184 27134809 ~ 27136451 (-) True XLOC_021228
TCONS_00041655 mRNA upstream 67413 27599775 ~ 27622854 (-) True XLOC_021235
TCONS_00041656 mRNA upstream 171270 27703632 ~ 27706576 (-) False XLOC_021236
TCONS_00041657 mRNA upstream 173028 27705390 ~ 27709692 (-) True XLOC_021236
TCONS_00041658 mRNA upstream 546565 28078927 ~ 28079678 (-) True XLOC_021237
TCONS_00041659 mRNA upstream 675606 28207968 ~ 28226948 (-) True XLOC_021238
TCONS_00041649 other downstream 291460 27238034 ~ 27239175 (-) True XLOC_021230
TCONS_00041644 other downstream 412274 27117768 ~ 27118361 (-) True XLOC_021227
TCONS_00041640 other downstream 444295 27065286 ~ 27086340 (-) False XLOC_021225
TCONS_00041633 other downstream 880491 26649505 ~ 26650144 (-) True XLOC_021218
TCONS_00041632 other downstream 885667 26644234 ~ 26644968 (-) True XLOC_021217
TCONS_00041673 other upstream 1247353 28779715 ~ 28779812 (-) True XLOC_021246
TCONS_00041674 other upstream 1247587 28779949 ~ 28780037 (-) True XLOC_021247
TCONS_00041675 other upstream 1247895 28780257 ~ 28780333 (-) True XLOC_021248
TCONS_00041691 other upstream 2159890 29692252 ~ 29760118 (-) False XLOC_021258
TCONS_00041692 other upstream 2159890 29692252 ~ 29822751 (-) False XLOC_021258

Expression Profile

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