RNA id: TCONS_00042422


Basic Information

Item Value
RNA id TCONS_00042422
length 3589
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id XLOC_021220
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 26787328 ~ 26791054 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

accacgtctttggactgtaggggaaactagagcacccggaggaaacccatgcgaacacggggagtacatgcaaactccacacagaaatgccaaccgactcAGCTGAAAGTCGAActagtgacctccttgctgtgaggcgatcatgccacccactgcaccaccatgatgccTGCATAATAACTTGATATGAATACAGTTCAACGAAAGCTTAATGCACATTATTGTCAGTTAAATAACCCCAACAAGAGTCTGATAAGAgaacttctttaaaataaaacaatttaataacacACAATAACATTAGACACATGTTTTTGATCTGTTCCACACAGTTTATTTAACAATATGGTATATAAGtaagaaataagtttttttaaacCAGTTTATACAGTGATTCCATTCTCTCTTCCTTATATTTATAGTACTTTACTTAATAACTTGCACGATTTACATTACAGGGGAAAGCTGAGCCCCTCTTCAAGTTAGTGTGAGAGGAATGAGGGTCAATAACAGAATCCATTCTGTATTCCAACAAGCAGTCAACCAGTGATCGCCCATTCCCTCCCGCTCAGCTTAGGGGCCCCGCTTTCTCCCACAggctctctcgctcgctcgctctagctctctttatatttatatatctgtATGACAAAATTAGGACAAAAAAGCAACAATTTTCTACATCTGCAAGACAGAACCTCTGGATCCAGACCAGTGAGATGTTGTAAATGTGTACATATCCTCTTGGGGGTCGGTGTAGTACTGTCTGagtgatgcatgtgtgtgtgtgtttgcatacatGCGTATGCACAGTTCCTATCGATACAAACAAATAGTTCTCCTCATATGAACTTCACAATGAGGAAAGGAGATAACTCCAAATgcatgtatgaaaaaaaaaaacgagtgcaACACTAGAATACAATCGCCAGGAAGGATGACAGACAGAGCAGAAAACCCTGGCTCAAACTCCCCGGCATGTTATTTTACAGTCTTCCAACACAAAATGCTGTAAAGTTAGATAAGGTATAAAACAAAAGTATGAATGATATAATGACGTTTCCATTTTCTTACAAAAAAAAGGCATGAAACCAGATCGCCGCTGCCAtccccaaacaaaacaaacaacacatgAACCACACAAGGGTCCGaactgaacaaaaaatatattctttGTGATTTAGATTTCTTTTAAACAACAATTTTCCCTCTTTAAAGGAAGAAATCAgtctcttttcatttttttttaggaaacatcAACATTCCCTAACCTTGTCGacataaatttctttttttcataCATTTCTTCAAACTTTTTTACATGTCAGTACAAAAAAATTGAGAatttagagaaaaaaacaaaacaacagagcCACAAAAAGAGGAAGGGGGAGACTGTGGTGGGTAGAGTCTCCCAGTAAACGCTACAATCCCTCCACAAATTTCTCTAGGGTGTCTCCTGTTGTGTCTCCCACCATGTTTAAGTCACTGGGCAGCCCTCCCCGATTGGGCGTATTGAGCTGCGGGAGCATGGCACTCTGCTCGGGCGTACCCAGATGTCCTTGATCCATGGAGCCAGGCATGGGTGTTGTCAGACCAGGGTGTGGTGACCCCGTATGGGATGGCACATGTTGGGGTGACGGCTGAGGCTGAACGTGTGGGGAAGGGCTGGAATGTGGAGGAGGCTGCTGTGACGGAGGTCTGGGTGATTGTACGGGGCCTGGCGAACACACCTGATTACTGAGTGCATTAGCCATGGGTTGGCCGGGTAGGTGTGCGCCCTGCGGCTGGCCCGAGAGAAGGTGAGTTTGTGGGCTCATGGGGCTCGGTTGTGCCTGTGAGCCCATGGGAGGCTTGAGGACAACCTGTTGTTGCGGAAGCTGCTGTTGCTGTAGTAGGAGATTGTTGCGCTGGTGCAAAAGGTTGGGTGTGCCATCCATAGCCATCTGGGCCATTGGGGGAAGCTGGCCCATGGGTCCACCTGTTCCCTGCATGGCcaactgctgctgctgcatcCGGAGTTGCGTGTAGTTGGTAGCAGTTCCTTGTGCCTGTGGGAACTGGCCATGAGCTTGAGGCATCCCTCCctgctgctgttgttgctgctgctGGGCCATGCCAGGTCGTGGCACAGCCTGCATAGCTGCCATGTTCTGCATGGCTGGCTGCGCTGCGTGTATGCCCTGCTGTGGCTGCTGCTGCTGGGGCTGGCTGGCGTGGTACTTTGCAGTTCTCTGTTTGATGAAGGCTGCCATGAGTTGCGGGTTCGATTTGAGGATGTTCAACACTTGCTGCTGTTGTTGGGGTGAGCTGGGTGACTTGAGGGTGCGTAGCAGATCCTGTAAGGCATTAGGAGCGATGCCTGCGGCTCTCTGGGGTGCTTGCGGTCGAGGGCCCTGCGTGGGCACCATCATGCGTGGCTGGGCAACTTGCTGGGGCATTGCGGGTCTCTGTATAGGCAAGGTCGACTGAGGGCCCTGTGGGGTCTGTTGAGCGACCTGCTGCTGAGCTGCTGGCATACTAGGCTGAGCGCCTCCAGGCCACTGTCCTTGCGGCATGGGCTGCATGACCTGCTGCCCGCGTGGCCCAACAAGCTGCATGGGTGGTTGCATTGCACCTGGCATGCGCGGCTGCTGGTGGTTCATGGGAAGGCCATTCATGGTCATGCGATAGTTCTGTTGAGCCTGCGCCACCATCTCTATGTGCCGTGCCATCTTGACTGCCATAGGTggaggctgctgctgctgctgcggaGGTTGTTGCGGCGGAGGCTGCTGCTGGGGTGGCTGTGGGAGTGGAGACTGCTGCTGATGTAGTGGGGACGCCTGTGGGCCGGGTTTGCCCTGTGAGGCTTGAGGAAGGGGTTGTCCATTGCGTGGGGTATTGGGATAGGTTGGTGACATTACGACAGCGTTTGGCGTAGTCGGCTGATTGGGCAGCGGTTGCGGCGTTTGAGGCGTGTTGGGTTGCTGATGCGAGGTGGGTGTGCTGGGGGCTGTGGATGCGGGTGGTGACGGTAGGCTTTGAGGCATGGCTCGACCCTGCATAGTGGCCATGCGTCTCCGCATCATCTGCGCCTGCTGCAGCCGGTGTTGTAGCTGCTGCTGCCGCAGTTTGTGCTTGATATTGAGGCAGAAGGGCACAGGACACTTGTTCTCCTGGCAGTGCTTGGCATGATAGCAGCAGAGAGCAATGAGCTGCTTGCACACCGGACAGCCACCGTTTGTCTTGCGCTTGCAGCCCTTGGTGTGCTGCACCACACGCTTCATCTTCTGGCAAGATGGCAAAGAGCAGTTGGCGTTGCGGCACTGGCAGGCATGCACCAGAGACTGGATGCAACGCTGGATGCTTAGACGCCGGCTCTCTTGAGGACTCTTGGAGGCCTCACCACTTTGGCTACTGCTGTCATCATCCAGACCCAGACCCCACTTAACCATCTGGTGCTCATGTCCCTTAGCGTTGTAGCAATTAATACACAGGTCAAAGTCCTGAGGAAAGATAAAAAAAACCATGGTCAAGGGAGGCATGACAGacatatgaaatgtataattagATAGTTATGTTTTAAAGGCAATCAATGAAATTAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041634 lncRNA downstream 120388 26665958 ~ 26666940 (-) True XLOC_021219
TCONS_00041973 lncRNA downstream 403376 26379023 ~ 26383952 (-) True XLOC_021211
TCONS_00041972 lncRNA downstream 417386 26359562 ~ 26369942 (-) True XLOC_021210
TCONS_00042421 lncRNA downstream 1043537 25735181 ~ 25743791 (-) True XLOC_021199
TCONS_00042420 lncRNA downstream 1173987 25606015 ~ 25613341 (-) True XLOC_021197
TCONS_00042423 lncRNA upstream 279942 27070996 ~ 27086340 (-) False XLOC_021225
TCONS_00042424 lncRNA upstream 279942 27070996 ~ 27089055 (-) True XLOC_021225
TCONS_00041974 lncRNA upstream 708218 27499272 ~ 27564155 (-) False XLOC_021232
TCONS_00041975 lncRNA upstream 751436 27542490 ~ 27564155 (-) True XLOC_021232
TCONS_00041654 lncRNA upstream 802929 27593983 ~ 27597355 (-) False XLOC_021234
TCONS_00041631 mRNA downstream 192301 26585096 ~ 26595027 (-) True XLOC_021216
TCONS_00041630 mRNA downstream 229162 26524760 ~ 26558166 (-) True XLOC_021215
TCONS_00041629 mRNA downstream 262732 26519299 ~ 26524596 (-) True XLOC_021214
TCONS_00041628 mRNA downstream 272942 26513454 ~ 26514386 (-) True XLOC_021213
TCONS_00041627 mRNA downstream 303060 26483105 ~ 26484268 (-) True XLOC_021212
TCONS_00041635 mRNA upstream 31278 26822332 ~ 26834043 (-) True XLOC_021221
TCONS_00041636 mRNA upstream 48187 26839241 ~ 26852516 (-) True XLOC_021222
TCONS_00041637 mRNA upstream 62200 26853254 ~ 26865361 (-) False XLOC_021223
TCONS_00041638 mRNA upstream 69403 26860457 ~ 26865181 (-) True XLOC_021223
TCONS_00041639 mRNA upstream 138500 26929554 ~ 26945493 (-) True XLOC_021224
TCONS_00041633 other downstream 137184 26649505 ~ 26650144 (-) True XLOC_021218
TCONS_00041632 other downstream 142360 26644234 ~ 26644968 (-) True XLOC_021217
TCONS_00041613 other downstream 980771 25806441 ~ 25806557 (-) True XLOC_021200
TCONS_00041611 other downstream 1244129 25540945 ~ 25543199 (-) True XLOC_021196
TCONS_00041610 other downstream 1312297 25473300 ~ 25475031 (-) False XLOC_021193
TCONS_00041640 other upstream 274232 27065286 ~ 27086340 (-) False XLOC_021225
TCONS_00041644 other upstream 326714 27117768 ~ 27118361 (-) True XLOC_021227
TCONS_00041649 other upstream 446980 27238034 ~ 27239175 (-) True XLOC_021230
TCONS_00041651 other upstream 738578 27529632 ~ 27532362 (-) False XLOC_021233
TCONS_00041652 other upstream 739581 27530635 ~ 27532362 (-) False XLOC_021233

Expression Profile

//