RNA id: TCONS_00041611


Basic Information

Item Value
RNA id TCONS_00041611
length 462
RNA type processed_transcript
GC content 0.52
exon number 4
gene id XLOC_021196
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 25540945 ~ 25543199 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGAAGAGGAGAGAAGCGGAAAGCAGATGATGCTTTTCAGAGTGTTTCTGGTGGAGGCAAACCATCTGCCCACCGGAAACGCATCAGAGTTGCAGAGCTGGAGAACACAAGTGTAGACGCTGACACAGAGGCGTCCAGCTCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGGTTTGCAGAGTGATTCTGATGGAGTCAAACCATACGCTCTGCGGAAACGCATCAAAGCTGCAGAGACGTCCAGCGATGAGAACAGCAGCTCAGAAGCTCCAAGAGCACAGAAGAGGAAGGCTAGATGTCTGGATCAGAACACAGCTGCTGCAAAACGAGTGAAAACAGCACAGATCCAACATGGCAGCAGCAGCAGTGGCGGGAAAACTGCAGCAGAAGACAGCAGCTCAGCTAAAGACAGCAGATCAGTTGAAGACAGCAGATCAGCTGAAGACAGCAGCTCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142266

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042419 lncRNA downstream 6955 25498134 ~ 25533990 (-) True XLOC_021194
TCONS_00041970 lncRNA downstream 34802 25505556 ~ 25506143 (-) True XLOC_021195
TCONS_00041967 lncRNA downstream 138507 25400742 ~ 25402438 (-) True XLOC_021189
TCONS_00041966 lncRNA downstream 180375 25360118 ~ 25360570 (-) True XLOC_021188
TCONS_00042418 lncRNA downstream 196312 25343304 ~ 25344633 (-) True XLOC_021187
TCONS_00041971 lncRNA upstream 774 25543973 ~ 25546076 (-) True XLOC_021193
TCONS_00042420 lncRNA upstream 62816 25606015 ~ 25613341 (-) True XLOC_021197
TCONS_00042421 lncRNA upstream 191982 25735181 ~ 25743791 (-) True XLOC_021199
TCONS_00041972 lncRNA upstream 816363 26359562 ~ 26369942 (-) True XLOC_021210
TCONS_00041973 lncRNA upstream 835824 26379023 ~ 26383952 (-) True XLOC_021211
TCONS_00041609 mRNA downstream 37968 25464880 ~ 25502977 (-) True XLOC_021192
TCONS_00041608 mRNA downstream 71194 25464880 ~ 25469751 (-) False XLOC_021192
TCONS_00041604 mRNA downstream 123813 25415980 ~ 25417132 (-) True XLOC_021190
TCONS_00041602 mRNA downstream 462227 25074074 ~ 25078718 (-) True XLOC_021185
TCONS_00041601 mRNA downstream 462295 25066110 ~ 25078650 (-) False XLOC_021185
TCONS_00041612 mRNA upstream 68216 25611415 ~ 25612680 (-) True XLOC_021198
TCONS_00041614 mRNA upstream 447931 25991130 ~ 26005894 (-) True XLOC_021201
TCONS_00041615 mRNA upstream 542144 26085343 ~ 26100282 (-) True XLOC_021202
TCONS_00041616 mRNA upstream 586051 26129250 ~ 26175237 (-) True XLOC_021203
TCONS_00041617 mRNA upstream 636985 26180184 ~ 26236275 (-) False XLOC_021204
TCONS_00041610 other downstream 65914 25473300 ~ 25475031 (-) False XLOC_021193
TCONS_00041605 other downstream 105397 25432849 ~ 25435548 (-) False XLOC_021191
TCONS_00041607 other downstream 105397 25433780 ~ 25435548 (-) True XLOC_021191
TCONS_00041606 other downstream 105434 25432923 ~ 25435511 (-) False XLOC_021191
TCONS_00041600 other downstream 491740 25045692 ~ 25049205 (-) True XLOC_021184
TCONS_00041613 other upstream 263242 25806441 ~ 25806557 (-) True XLOC_021200
TCONS_00041632 other upstream 1101035 26644234 ~ 26644968 (-) True XLOC_021217
TCONS_00041633 other upstream 1106306 26649505 ~ 26650144 (-) True XLOC_021218
TCONS_00041640 other upstream 1522087 27065286 ~ 27086340 (-) False XLOC_021225
TCONS_00041644 other upstream 1574569 27117768 ~ 27118361 (-) True XLOC_021227

Expression Profile

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