XLOC_021221 (si:dkey-44g23.5)


Basic Information

Item Value
gene id XLOC_021221
gene name si:dkey-44g23.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 26822332 ~ 26834043 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041635
GGGGGCGTGCCGTGACGTCACGGAAGAAGGTTGCGATCTGACCGTCCGAATTTACAGTAGTGTCCAGCCTGAACCAGAACTCAGAAAGTTTCCCAAGATAGACGCCTCTCGCGCATACAAACACACCGGACGCTCTGCGAATTAGCCTGGCGCGTAATTAGGGTAATAAACGCTCTTAACCTTGACTGACCTTACGTCTGCTGTAAGTAAACACAAGGGCGCTTAAGTCCACTCGCATATGCTCCCTGCAAGCGTCTGACCGGCAGATTTGCAGACGGGATCGACACTGCTTATTTCCACGGTGGCTGCGTCAAAAGAGCTCCGTCCTGAAGGGGGATCGCGTGACGTTTTCTGGCGTGCATTTAATTGTGACTTAAGCACTGACCGATCCGTAGACCTCGCGTGGATCTATCGTACCGCAGGGGTTCTCCAGAAACCGTCTCTCACATGATGTACACAATAACCAGAGGTCCCAGCAAACTTGTTACACAACGCAGAACAGGCCCTACACAACAGATTGAGAGCAAAGGAAACGACCTGAAACAGAAGCAGAGCCACTGGCTTGTATCGGATTCACCAGCGCCCAAGATTGTGTTTCATCGTCTGAACGGAAAGCGGTACCACAGATCCACCTCTCCAAAAGCCGACAACACAACTGAAGGATTCACACCAGCTCACGAGGAAAATGTCCGGTTTGTTTATGAGGCTTGGCAGGAGGTGGAGCAGAAGCTGGAAGCAGGATCCCAGCCGGAGCACGGGAAAGGTCCAGTTCAGTATGCGGAGAGAAACCCCAATCCCGGCATGAAGAATTTTGTGCCGATTGATCTCGAGGAGTGGTGGGCGCAGCGTTTCCTGGCTAACATTGCCAACCTGTCATGACAGGTGCATGATGGGGCATGAAGAGCTGGTCCTGACTGAGGCAGTGCAGCCTGACTCTCTTAATCAAGGCGGATGATCATGTGAGAGATCTGCTGGCTAGATGAATTCAGCTATCCTGAGAAACTGTTTGCCCAGCCGGACTCAGACTCTCTCTCTCATGCACACCCAGGAGGAGcagagattttttttgtcttctgctTCTCTCTTTGTTAGGATGTGAGATGTCTGTTTTTCGTGACAGatctttgcaaaaaaaacaaaaaaaaagtgatgttataaaactaacaaaaaaagtgCAGTAAAAGTTT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-233 Predicted to be located in cytoplasmic stress granule and nucleus. Orthologous to human MCRIP2 (MAPK regulated corepressor interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000061256

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041635 True 1187 mRNA 0.50 5 26822332 26834043

Neighbor

gene id symbol gene type direction distance location
XLOC_021220 NA coding downstream 31278 26787328 ~ 26791054 (-)
XLOC_021219 BX908757.1 coding downstream 155392 26665958 ~ 26666940 (-)
XLOC_021218 BX908757.2 coding downstream 172188 26649505 ~ 26650144 (-)
XLOC_021217 BX908757.3 coding downstream 177364 26644234 ~ 26644968 (-)
XLOC_021216 SRL coding downstream 227305 26585096 ~ 26595027 (-)
XLOC_021222 gde1 coding upstream 5198 26839241 ~ 26852516 (-)
XLOC_021223 hmox2a coding upstream 19211 26853254 ~ 26865361 (-)
XLOC_021224 cxcl12b coding upstream 95511 26929554 ~ 26945493 (-)
XLOC_021225 CR749748.1 coding upstream 231243 27065286 ~ 27089055 (-)
XLOC_021226 xpnpep1 coding upstream 258426 27092469 ~ 27115241 (-)
XLOC_021211 NA non-coding downstream 438380 26379023 ~ 26383952 (-)
XLOC_021227 BX927308.2 non-coding upstream 283725 27117768 ~ 27118361 (-)
XLOC_021230 BX927308.1 non-coding upstream 403991 27238034 ~ 27239175 (-)
XLOC_021232 NA non-coding upstream 665229 27499272 ~ 27564155 (-)
XLOC_021233 CR388079.2 non-coding upstream 695589 27529632 ~ 27532362 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G161511 NA unknown CI01000030 null 6701731 ~ 6704145 (-)