G184623


Basic Information

Item Value
gene id G184623
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75254691 ~ 75256783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU209437
AACCATGTTATATAAACATTATAGCTCCTTTTttcagtttcttttttttcttttctttttttacagtAAATATCATTATTGtacaaatgtatacaaaattGAATCAGGCTAGTCAAGTTACACAAAAGAGTAAGTCATGTATTAAAGCACAATCAAGGATTTCCCCAGGGACCTGCCTGTACCAGGGCTACATAATGTTCTTGGTGTTATACACACGTCAACACGTGACTCCGATAAACAGGCATGATCCTGAACGCCAAACCATTTAGTCACACGATGGCCATGGCAGAAAGGACAACACTGGCAGCGATAGGCCCCGATGTAAAAACGACATAACATGAGCTGTTAGTTCTTCattttgggttagggttacagtgcTGCTTTTTTGTAATGTGTAGTTTACAATGAACTTAACTTTTGGTAAGGTTGGGATAAGAGTGGGGTAAGACTTGAAACTGTCTGTGGTTCAGGTCTGTGGTAACAGTGCCTGTACCATGgtcctctccatcatggccaaacagtgaCATATCCATGGTTTGAGGAGCGTCCAACATCGAACAGACTCATCCCGTCACATTGCAGCATTCTGACACCGCGCTTTCAGCGTCTCGTTGACAGCACTTAGAGAGCAACACAAAGAAGAAACAAGCAGTAGAAGAAGACGGAAAAGAAACAGTCTTTATACTGTATATGCTGATATCATTCTCCAGTTGTCTGCTCACCAGGGCATGTGATACAAACTCCTGTTGTCTTCTGGAAAGCTTTTCTGTCTTTCACTTTGCTGAAATCCTGAGTCTGGGGATCCAGAGGAAACTAACTTCAGGAGCACATTGTTCTACAGAGGTGGGTTCAAGTCTGTCTGGCAGTCTGAAGGTGAATGAGACTGACACCCAGGCTAGATAGATACCAGCTAGTTATGTAAAATAAGAAACACATCTCTGAGCTACTGCTCCTGCTCTACTACTACACATAGCATACTGTACGGCGTGCAACTGGGACACATTGGGACATCATTCCAATGACTCCCCATCAAAGATTAACTCTGGATATATGAATGGGATGTTGACGCTACATAGGCACTAGGAATCTGATGCATCAAATGAagctatactgtatatgtatctATAAAGACCTGGGTCAAATAGATAGTGTATCACTTGAGTTGCACTAGATTTCACTTTCCcggtgcaatggaaccaatggaatagtcccaaaagtacaACCATGCTCACTCAGCAAGTGAACCTAAATGAAGCACACCAAAAGTATTTAGAAAGTATTTGGCTCAGGTTGGTACCATGGCCATAACGATATTAAAGTATGATTTGACCATGTTATCAGAGTCTCTTTCATGGGCCAACTATCCCCATTACTCTAATGAGCTTTATTTGGTGTCATAGTTAGTGTTGTCCAGCTCTCTGTTGAGTGAACCCTACTCTAGTCTACTGCATCTATTTACTCGCTCCTGGTTGACCTGGAACATTTCAGTTACAGCGTTTGTTGTCTTCATCATGATCTTTTTCTACATATAATAAATATAACAATAATACAAACAACTAGGCATACACAAATCATTTGCTGTCAGTGAAAAATAATATGTTGGCATGAAAGGACAGCCACTCAACCTCCCTCAGACTCAAACCAATACATAGATACTACAGAATTAAAGGGTTTGGTTAGCTCTTACTGTTGCAccatagaatataatagaatagaatagaatatctcAGGCAATTGAAACATGGTAGAGAAGAGAAGTGAGCGATGAGAGAGAGCACCCTTTGGCATTGGAGAACGATCGGAGAACAGGAGAGTGACTCCTCTTCCATACTGGCAGTGAGTTAACACATCAGTGACTACGTTCAGAGGATGGAGCGTCAGAAAACAGTCCAATGTAAAACACTGTCTAAGTGagatgtgagtgtgtatgtgtgtgtgtgtgcatttgtgtgtttgtgtaggggtCATGAGTCTCGGGAGCCAGTGAGGAGCCACAGCAGCAGTAGTTGGAGCCCCAACAAGGGCCAGAGGGAGGGGCTTAGAGAGGTCCCGCCCCCACAGTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209437 True 2065 lncRNA 0.42 2 75254691 75256783

Neighbor

gene id symbol gene type direction distance location
LOC110496093 LOC106561201 coding downstream 660265 74533285 ~ 74594426 (-)
LOC118937295 NA coding downstream 746586 74501414 ~ 74508105 (-)
LOC110496063 LOC106561200 coding downstream 781375 74452532 ~ 74473316 (-)
LOC110501892 LOC106561189 coding downstream 821469 74241237 ~ 74433222 (-)
LOC110496015 LOC106561186 coding downstream 1087341 74157073 ~ 74167350 (-)
LOC110496174 LOC106561210 coding upstream 99788 75356571 ~ 75361242 (-)
LOC110501959 rbm28 coding upstream 322067 75578850 ~ 75582017 (-)
LOC118936395 rbm28 coding upstream 327774 75584557 ~ 75585136 (-)
LOC110496186 LOC106561212 coding upstream 338583 75595366 ~ 75607735 (-)
LOC110496199 LOC106561215 coding upstream 387558 75644341 ~ 75656164 (-)
G184615 LOC106561208 non-coding downstream 6176 75243828 ~ 75248515 (-)
G184561 NA non-coding downstream 109103 75141952 ~ 75145588 (-)
G184560 NA non-coding downstream 113202 75141128 ~ 75141489 (-)
G184559 NA non-coding downstream 113619 75140743 ~ 75141072 (-)
G184558 NA non-coding downstream 114187 75140270 ~ 75140504 (-)
G184663 NA non-coding upstream 47756 75304539 ~ 75308405 (-)
G184672 NA non-coding upstream 59228 75316011 ~ 75316325 (-)
G184679 NA non-coding upstream 64428 75321211 ~ 75321423 (-)
G184686 NA non-coding upstream 69905 75326688 ~ 75326925 (-)
G184701 NA non-coding upstream 71099 75327882 ~ 75328403 (-)
G184006 LOC106561202 other downstream 522054 74730872 ~ 74732637 (-)
G183538 NA other downstream 1143900 74106883 ~ 74110791 (-)
G183096 NA other downstream 1261146 73993078 ~ 73993545 (-)
G182882 NA other downstream 1578268 73676212 ~ 73676423 (-)
G182708 NA other downstream 1908844 73344950 ~ 73345847 (-)
G186002 NA other upstream 620576 75877359 ~ 75878060 (-)
tnni1c LOC106561253 other upstream 728376 75985156 ~ 75989573 (-)
adm2b adm2 other upstream 836387 76093170 ~ 76099909 (-)
G186197 LOC106561241 other upstream 1016741 76273524 ~ 76293392 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G102420 NA non-coding NC_048565.1 CM023219.2 93618263 ~ 93618655 (-)
tiger barb (Puntius tetrazona) G77352 NA non-coding NC_056708.1 CM032077.1 13805089 ~ 13805329 (-)