XLOC_021378 (taf11)


Basic Information

Item Value
gene id XLOC_021378
gene name taf11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 309063 ~ 315437 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042509
CCAAGTGTTTGACGTGGCTGTGCACGCTTGTGCGGACTCTTATTTTGTAGTTTAACCGGATATGCTCGTGTTTACTTTGTCGGTCTGAGGCGCTCGTCAGAGAACACTCGttggatttttgtgtttttaaacattattttcaacGCGGTTGTCGGTCTTAGATAAACACACTACAGCAGTGTCCATTATTTCCACATTCCCTTTCCCTGATCCATCAGCTGAAATCATGGCAGACCCGGCCCGTGTGAAACCTGAAGCGGGCACATCGGTGGACAGACCCAAACCGGGCGAGGGGTCCAGTGAGGGTCCGGAGGGCAGCAGTAAGAGCTCTGACCCTGCTGCGGGACAGACTGCTGTAAAAGAGGAGGGCAAGACGCTCAGTCAGAGGCCTGCTGAAGATGCtggtgatgaagaggaggagggaTCTTCATCTCTGCATCCTCCTCCTGCCAAAAAGCTGAAAGTGGAGCCGCACGACAAGAAGAAGGAGAAACGCCACAAAGTGGATGAAGACGAAATCCAGAAGATGcagtgagctgtgtAGTTTTAGTATCATCGTTCTCTGAAGAGCAGCTGAACCGCTATGAGATGTACAGGCGCTCGGCGTTCCCTAAGGCAGCTATTAAAAGACTGATTCAGTCCATCACCGGATCATCGGTCTCTCAAAACGTGGTCATCGCCATGTCCGGAATCGCCAAAGTGTTTGCTGGAGAGATTGTTGAAGAAGCTCTGGATGTGTGTGAGAAGTGGGGGGACACTCCACCTCTGCAGCCCAAACACATGAGGGAAGCCGTGCGGAGACTGAAGAGCCGAGAGCAGATTCCCAGc
>TCONS_00042510
CTCTTATTTTGTAGTTTAACCGGATATGCTCGTGTTTACTTTGTCGGTCTGAGGCGCTCGTCAGAGAACACTCGttggatttttgtgtttttaaacattattttcaacGCGGTTGTCGGTCTTAGCTGAAATCATGGCAGACCCGGCCCGTGTGAAACCTGAAGCGGGCACATCGGTGGACAGACCCAAACCGGGCGAGGGGTCCAGTGAGGGTCCGGAGGGCAGCAGTAAGAGCTCTGACCCTGCTGCGGGACAGACTGCTGTAAAAGAGGAGGGCAAGACGCTCAGTCAGAGGCCTGCTGAAGATGCtggtgatgaagaggaggagggaTCTTCATCTCTGCATCCTCCTCCTGCCAAAAAGCTGAAAGTGGAGCCGCACGACAAGAAGAAGGAGAAACGCCACAAAGTGGATGAAGACGAAATCCAGAAGATGcaAGTTTTAGTATCATCGTTCTCTGAAGAGCAGCTGAACCGCTATGAGATGTACAGGCGCTCGGCGTTCCCTAAGGCAGCTATTAAAAGACTGATTCAGTCCATCACCGGATCATCGGTCTCTCAAAACGTGGTCATCGCCATGTCCGGAATCGCCAAAGTGTTTGCTGGAGAGATTGTTGAAGAAGCTCTGGATGTGTGTGAGAAGTGGGGGGACACTCCACCTCTGCAGCCCAAACACATGAGGGAAGCCGTGCGGAGACTGAAGAGCCGAGAGCAGATTCCCAGctccaaacacaaacacatcctCTTCCACTGAACAGCATCACGGAGAAACAGGACTGGACATCTCTCCGCTGTAAACAGTAATGATGATGTAGAAAAgaggatttgttttattattattattattattattatgaaatactTTGTTGCCTAATGTTGGTTTAGTTTTGATGCCGTGTGTGTTTTGGAAAGCACATCTAATGTTATCTCCTCATGTTTTGATGAAAGAAtgtgaaattaaatgtttgtacTAAACCCTGCAGTTCTTCACTCTTATTAGGATGAGGATTATTTCAATATTAGGACTGGGTGAAGCAGACTCAGACTAAAAGGCAGCAAACATAAAGACATCAGGCAAAGAAAAGGAATCAGATGTCGGGTGGAGTGCGGCGTGTCCCACCCTACGTGACGTCACGCGACTCAGAACAAGCAGTGGTGTAATACAGTGGTGGGAGTCGCTTGGTGAtttaaaaaactcaaataaatgttACTGAACTATTAtgatgaccatattttatccataacctacagaagatacaAATAGCCGTTTTTAAtagtaaacaacaacatgcaaatgattAGCCCTCAGCCTTTACATGATCTTCACAGGATCAGTGTGTTTACATTGGATCATCCACACAGCACTcgcgtcagctgcagcagattttaCAGCACCGCgataaactttctgacacctttatggcactgGAGTACATTAAAAATAACTACAGACCACAACTGAACACtgaggatgatctctgagtgcCGGTCTCcgaaattaaaccaagaatagacttgtgctgaacaCAGAGAGTGATATGCAATAAAAGCCCCGTCTACTCCATATTCAGTCTCAACTGAGAGCACATCAACACACTGAGATAAAAGCCTCGGCAGCTTCTGATTCACCATGACTTCTCAAGTCACCATGAGCCAGATGTTGCTGCATACTTTATTACGGTGAATGTAAGTGTTTCagtagtgttgtgtgtgtgtgtcaccaaTGGTTTGATGCTGAAATCTTGTGCGGTGTGTTGTTAGGAGCTAGGTACACTCAGAACACACTCCGTTTGTATATGAACACTCAGAGTTCCAGCGgtttcatgaacagcagattctgggactttttaaagcattcattttaaatcaagcacctCCGCGCTTCACACTGCCAGCATATGCAGCGCCATGGAAGACCTCACTGTACCTAATATTTCACtcacacttaatatttacattaaaatagcaATGATCAGgatacattcgttcattttccttcagctgagtcccttatttatcaggggtcaccacagcggaatgaactgtcaactattccagcatatgttttacacagcggatggccttcctgatgcaatccagtactgggaaacacccatacaccctcattcacacacacactcatacactacggccagtgtagttgatcagttcccctatagcgcatgtgtttggactgtggggggagtTCTTGTGTAAGATGTAAGTGTAAGGTTTATAAATGAAGAATTTCTCGTttgtttttggttcattttctgAAAGCAGAACAGCACAATTGTTGAAATAACATCATAAACGTTAAACTCAAGCACCTCTGTTTGTTTTTAAGCTCTTCCCATGCCTTGAATTCACATGTGTGAAACTTGAAGCACTTTCAAGACTCATGGGAACCCAGAACACTTGGTTTTATCAAAACATGCAACCGTTGTTTGataaaagaaatgcatttttaacctttaagaaacattttattgataataATCATTGATCTTGACATATTTCCACACAGTTATGGTTCACAGAACCAACAAAATATCAGCTTTGTTTGAATGTTTTGTTCCAGGTGGTGAGATAAAGCATGAGAGAAGACTAAAACACAGTAATGAAGCGATCACAGGTCTAAATAAACCTCAGAGAAGCAACACCATGAGGGAAAACCCCAACTCAGACTTACAGAAAACGTCCTGTAATCCTACATTTCCACACTTTCTGCTGCCCTAAACATTGATCTGCTCTAATTTACTATgaccttttatgtgaagctgctttgacaccatctacattgtaaaagcgctgtacaaataaaagtgaactgaattgaatt
>TCONS_00042511
ACCGGATATGCTCGTGTTTACTTTGTCGGTCTGAGGCGCTCGTCAGAGAACACTCGttggatttttgtgtttttaaacattattttcaacGCGGTTGTCGGTCTTAGATAAACACACTACAGCAGTGTCCATTATTTCCACATTCCCTTTCCCTGATCCATCAGCTGAAATCATGGCAGACCCGGCCCGTGTGAAACCTGAAGCGGGCACATCGGTGGACAGACCCAAACCGGGCGAGGGGTCCAGTGAGGGTCCGGAGGGCAGCAGTAAGAGCTCTGACCCTGCTGCGGGACAGACTGCTGTAAAAGAGGAGGGCAAGACGCTCAGTCAGGTCTCTGCCTCTTCATTCTGCATCCTCAATGAATTCAGTTTCATTCTCATGCAAATAAATCAACCATGCATCACTGTGTTCCTCAGAGGCCTGCTGAAGATGCtggtgatgaagaggaggagggaTCTTCATCTCTGCATCCTCCTCCTGCCAAAAAGCTGAAAGTGGAGCCGCACGACAAGAAGAAGGAGAAACGCCACAAAGTGGATGAAGACGAAATCCAGAAGATGcaAGTTTTAGTATCATCGTTCTCTGAAGAGCAGCTGAACCGCTATGAGATGTACAGGCGCTCGGCGTTCCCTAAGGCAGCTATTAAAAGACTGATTCAGTCCATCACCGGATCATCGGTCTCTCAAAACGTGGTCATCGCCATGTCCGGAATCGCCAAAGTGTTTGCTGGAGAGATTGTTGAAGAAGCTCTGGATGTGTGTGAGAAGTGGGGGGACACTCCACCTCTGCAGCCCAAACACATGAGGGAAGCCGTGCGGAGACTGAAGAGCCGAGAGCAGATTCCCAGctccaaacacaaacacatcctCTTCCACTGAACAGCAT
>TCONS_00042512
GGATATGCTCGTGTTTACTTTGTCGGTCTGAGGCGCTCGTCAGAGAACACTCGttggatttttgtgtttttaaacattattttcaacGCGGTTGTCGGTCTTAGATAAACACACTACAGCAGTGTCCATTATTTCCACATTCCCTTTCCCTGATCCATCAGCTGAAATCATGGCAGACCCGGCCCGTGTGAAACCTGAAGCGGGCACATCGGTGGACAGACCCAAACCGGGCGAGGGGTCCAGTGAGGGTCCGGAGGGCAGCAGTAAGAGCTCTGACCCTGCTGCGGGACAGACTGCTGTAAAAGAGGAGGGCAAGACGCTCAGTCAGAGGCCTGCTGAAGATGCtggtgatgaagaggaggagggaTCTTCATCTCTGCATCCTCCTCCTGCCAAAAAGCTGAAAGTGGAGCCGCACGACAAGAAGAAGGAGAAACGCCACAAAGTGGATGAAGACGAAATCCAGAAGATGcaAGTTTTAGTATCATCGTTCTCTGAAGAGCAGCTGAACCGCTATGAGATGTACAGGCGCTCGGCGTTCCCTAAGGCAGCTATTAAAAGACTGATTCAGTCCATCACCGGATCATCGGTCTCTCAAAACGTGGTCATCGCCATGTCCGGAATCGCCAAAGTGTTTGCTGGAGAGATTGTTGAAGAAGCTCTGGATGTGTGTGAGAAGTGGGGGGACACTCCACCTCTGCAGCCCAAACACATGAGGGAAGCCGTGCGGAGACTGAAGAGCCGAGAGCAGATTCCCAGctccaaacacaaacacatcctCTTCCACTGAACAGCATCACGGAGAAACAGGACTGGACATCTCTCCGCTGTAAACAGTAATGATGATGTAGAAAAgaggatttgttttattattattattattattattatgaaatactTTGTTGCCTAATGTTGGTTT

Function

symbol description
taf11 Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to several human genes including TAF11 (TATA-box binding protein associated factor 11).

GO:

id name namespace
GO:0051123 RNA polymerase II preinitiation complex assembly biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005634 nucleus cellular_component
GO:0005669 transcription factor TFIID complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040718-283 Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to several human genes including TAF11 (TATA-box binding protein associated factor 11).

Ensembl:

ensembl_id ENSDARG00000037855

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042509 False 828 nonsense_mediated_decay 0.52 6 309063 313319
TCONS_00042510 False 2842 mRNA 0.43 6 309099 315437
TCONS_00042511 False 886 lncRNA 0.51 5 309117 313356
TCONS_00042512 True 919 mRNA 0.49 6 309120 313478

Neighbor

gene id symbol gene type direction distance location
XLOC_021377 PDZD4 coding upstream 59963 216012 ~ 249100 (+)
XLOC_021376 twist3 coding upstream 299724 2669 ~ 9339 (+)
XLOC_021379 ap4b1 coding downstream 38981 354418 ~ 367693 (+)
XLOC_021380 zgc:101663 coding downstream 68345 383782 ~ 397300 (+)
XLOC_021381 CU929146.3 coding downstream 89538 404975 ~ 406890 (+)
XLOC_021382 slc25a55b coding downstream 94141 409578 ~ 419441 (+)
XLOC_021383 CU929146.1 coding downstream 97105 412542 ~ 412659 (+)
XLOC_021384 CU929146.2 non-coding downstream 126800 442237 ~ 442352 (+)
XLOC_021385 NA non-coding downstream 229826 545263 ~ 597603 (+)
XLOC_021393 CABZ01079873.1 non-coding downstream 831725 1147162 ~ 1152058 (+)
XLOC_021396 NA non-coding downstream 1322852 1638289 ~ 1638981 (+)

Expression


Co-expression Network