XLOC_021410


Basic Information

Item Value
gene id XLOC_021410
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 2581048 ~ 2593612 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044651
cggtactcccaggtacagatgtcgtctacacgctaagatctcatggtcgaacgcagcttcaaaaattagtttcaaaccggaagtacgaatttgctcgaaataacactaaaacaatcatttttcactttttagtgagatatctgtgttctaatagtgtttttagcagtgtgggacacatatacgactgtcaacagctcaacacatgtgctttggtgtttcgtgaccctttaagtccGATTGACAAACTTCGCAAATAAcggtcatttatttgtttacactTTACTCCACTagtaactgtttattaacaatgcAGTTATTCCCATCACCGTTCATCTCATTAGCATATCTCCACAGAAGCCATTCCTATTGGCTGATGAAGTCAGCAGACACAGTATCTGTATGACTCACTACTTAAACTGTTAacttgcgtgcgtgcgtgtgtgtttgtgtgtgagtatgtgtgtttgtgtgtgagtgtgtgtgcgcgttcgtTAACCAGCACGTGTGTGAGATATCGATCCGCAGTTCACGGAGCCTTTATGGCtttgagaacacacacacacacacacacacacacacacatgagagtTTTTCCAGGCGCCTCAGATGTATTAATGTATGCTGCCCTTTGTGTGGTGATTTCAAAGACACTTTGGGGTTTCTTATTTTAGAGCAAGTTTGAGATGGGACGAAGCCAGCCGCAGATTTTAATTAGATCGTTCAGTAATCAGAGCACGAATCACAGGAGGAAGAGACTCGTCGCAGTGAAGggcactttacacacacacacacacacacacacacacacacatatacacacagatcTCTGAAATTGTCTGTTCACTgcctgtctctctttctctgcagATAACATGGTTGATCAGACTAAAGTGGAAATCAGTGAAGCCAAGGCCACAGAGCTGGAGAAGAAGctgGACGCTGAGCTGACGGCCCGTCAGGAGCTGCAGGTGGAGCTGAAGAAGCTGGAGGCCGATTATGAGCAGAAGCTTCTGGATCTCAGCGCTGAGAAAGAGACGCTGGGGAAGGAGAAGGGCGAACAGGAGAAGGAGAATAAAGTCATGCAGTCTGAGATCAACCTGCTCAAGGAGAAGATTGAGAAGCTGTCAAAAGATCTGAAAGAAGCCAAAGCGAAGGTCATCACTGTGCACGTGCCTGTGGCTCCACCCCCTCGTCCAGGTGAAGCCAGTCTGCCTCCG

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044651 True 1217 lncRNA 0.46 3 2581048 2593612

Neighbor

gene id symbol gene type direction distance location
XLOC_021408 NA coding upstream 25543 2554298 ~ 2555505 (+)
XLOC_021407 LO017835.1 coding upstream 33286 2542158 ~ 2547762 (+)
XLOC_021406 NA coding upstream 113574 2463169 ~ 2467474 (+)
XLOC_021405 tcp1 coding upstream 137369 2421313 ~ 2443679 (+)
XLOC_021404 CABZ01048666.1 coding upstream 184017 2361184 ~ 2397031 (+)
XLOC_021411 CABZ01057928.1 coding downstream 73332 2666944 ~ 2673922 (+)
XLOC_021412 ncoa6 coding downstream 109432 2703044 ~ 2726590 (+)
XLOC_021413 zgc:114123 coding downstream 134483 2728095 ~ 2745986 (+)
XLOC_021414 top1 coding downstream 159033 2752645 ~ 2758099 (+)
XLOC_021415 top1 coding downstream 164987 2758599 ~ 2779863 (+)
XLOC_021400 NA non-coding upstream 525802 2050901 ~ 2055246 (+)
XLOC_021396 NA non-coding upstream 942067 1638289 ~ 1638981 (+)
XLOC_021393 CABZ01079873.1 non-coding upstream 1428990 1147162 ~ 1152058 (+)
XLOC_021420 NA non-coding downstream 723524 3317136 ~ 3326295 (+)
XLOC_021421 NA non-coding downstream 831989 3425601 ~ 3426360 (+)
XLOC_021423 NA non-coding downstream 943671 3537283 ~ 3537743 (+)
XLOC_021426 CU682640.1 non-coding downstream 1319692 3913304 ~ 3915754 (+)
XLOC_021427 FP102158.1 non-coding downstream 1346296 3939908 ~ 3944734 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000169_00097241_00102957 NA coding CI01000169 null 97211 ~ 102957 (-)