XLOC_021400


Basic Information

Item Value
gene id XLOC_021400
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 2050901 ~ 2055246 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044765
cgtttagctccaaccctaattaaacccaCTTGAACCAGATAATCAAGAACTTCAGAATTGCTACAAGCGTCTTggaaagtgtgttggagcagtTCAGATGCAAACTTTGTAGAACAAATGTTGCTCCAGGAGAAGGATTGTAAAAACCAGTTTTGATACGGGTATCCTCTGGCAGAGCAGGGAACGGTTGCTTACCTGCAGCATGTGTACTGGCCAGGACTTTCAATGTGGAGGCACCTTTGCGGGACCCACGCAGACGAATCAGGTACTTGGCTTTGGGCTTTCCCCGAAGCTGGAACTGACGGACTCCCTCCACATTCTGAGAGAGAACAAGTTTCCCATCTCGCCGCACCTGTACCTGCACTGCATCCAAGCAAGCATGCACAAACAGCGTGACCCGCTGGTGAGAGGAGACCGGTGCAAAGCGGAGGAACTTACTCCCCTTTCTCTTAACGAAGACATCAGTTACTTTCCCGTCCTTGAGCTCCACGGTTTTCTGCTTGGCCTCTTCCTTGGTGCGAGCAAAAGTGCCCACATACGCAGTACTCATGTTGGTACCTGTGTTGACAGCGAACACATCGAAATAATATTGTGTGTCTGGCTTTAGGTCCGTTATGGTAAAAATATTCTTGTTGCCTATGCAGATCTTCTGTATGTCGGCCACTTTGGGCTTGGGGATATATGCGCGACTCATTTTGTTGCTCAGAGCTCTGTTGGTGGTGAGGAAACGGTCTTTATGGAAATCGTTCTCAGATGGGACAAAACCAAAATATGCAAAGTCAAAGGGGCTAAAGTCCCGGCCGGGTTTCGGAGCTATCATGAAGGCATCATCCAGGCTCATCTTGGCCTCCGCTGCACATAAGCTCTTGAAGTTGTGCTCCTTGTTAATAACCACACAGTACTGGATCGGCTGGCCCATAACTGAGCCAGTAGGAGTAGGCTTCCAAGCTAGTGTAACAGTAGTACGACCCAATGCGGTAACATCCACCCTGGGGTCGTATGGCAGCTCAGGGTATGGTTGATCGGACTCGGGAGTTGTGGTAGAATAAATCTTGAAGTTGCTGTCCTTTTCGGTGGAGATGATTTCCAGCTGGTACAAGCCTGACGGGGAGCTGGAGGAGATGAATGATTCGACATCATTTCCTTTGTAGGTAAAGAGCTCGGTACCCTCGTTTGCCGTGACCTGCTGTTTCTGCTGTTCCAGTGGTTCTGGCTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044765 True 1217 lncRNA 0.49 2 2050901 2055246

Neighbor

gene id symbol gene type direction distance location
XLOC_021399 tgm1 coding upstream 302760 1730663 ~ 1748141 (+)
XLOC_021398 rabggta coding upstream 324341 1702624 ~ 1726560 (+)
XLOC_021397 stxbp3 coding upstream 352470 1661743 ~ 1698431 (+)
XLOC_021396 NA coding upstream 411920 1638289 ~ 1638981 (+)
XLOC_021395 utrn coding upstream 606066 1349277 ~ 1444835 (+)
XLOC_021401 cpeb2 coding downstream 81098 2136344 ~ 2161478 (+)
XLOC_021402 c1qtnf7 coding downstream 130151 2185397 ~ 2189062 (+)
XLOC_021403 cc2d2a coding downstream 136527 2191773 ~ 2260732 (+)
XLOC_021404 CABZ01048666.1 coding downstream 305938 2361184 ~ 2397031 (+)
XLOC_021405 tcp1 coding downstream 366067 2421313 ~ 2443679 (+)
XLOC_021393 CABZ01079873.1 non-coding upstream 898843 1147162 ~ 1152058 (+)
XLOC_021385 NA non-coding upstream 1453298 545263 ~ 597603 (+)
XLOC_021384 CU929146.2 non-coding upstream 1608549 442237 ~ 442352 (+)
XLOC_021383 CU929146.1 non-coding upstream 1638242 412542 ~ 412659 (+)
XLOC_021406 NA non-coding downstream 407923 2463169 ~ 2467474 (+)
XLOC_021408 NA non-coding downstream 499052 2554298 ~ 2555505 (+)
XLOC_021410 NA non-coding downstream 525802 2581048 ~ 2593612 (+)
XLOC_021420 NA non-coding downstream 1261890 3317136 ~ 3326295 (+)
XLOC_021421 NA non-coding downstream 1370355 3425601 ~ 3426360 (+)

Expression


Co-expression Network