XLOC_021395 (utrn)


Basic Information

Item Value
gene id XLOC_021395
gene name utrn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 1349277 ~ 1444835 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042540
ATGTTCCAGCAGCACAAGTTGACAGTGAACTCTCAGCAGCTCTCGGTTCCAGAGATCATCAACTGTCTGACGTCAGTGTATGACGGCCTGGAGCAGGAGCACAAAGACCTGGTCAACGTGCCGCTGTGTGTGGACATGAGCCTCAACTGGCTGCTCAACGTCTACGACACGGGTCGCAGCGGGAAAATCCGCGTTCTGTCCATGAAGATTGGTCTGCTCTCTCTTTGCAAGGGTCATCTGGAGGAGAAATATAAATgtctgTTTAATCAGGTGGCGTCTGCGGGCGGGACGTGTGACCAGAGGCAGTTGGGTCTCCTTCTGCATGATGCCATTCAGATCCCCCGGCAGCTGGGCGAGGTGGCAGCGTTCGGCGGGAGCAACATCGAGCCCAGCGTCCGCAGCTGCTTCCAGCATGTGACCAATAAGGTTGAGCTGGAGCCGAGGCAGTTTATTGATTGGATGAGGCTGGAGCCGCAGTCTATGGTTTGGCTGCCGGTTCTACACCGAGTTGCTGCGGCAGAGACGGCGAAACATCAGGCCAAGTGCAACATCTGCAAAGAGTTCCCCATCGTCGGCTTCAGATATCGCAGTTTAAAGCACTTCAACTATGACGTCTGCCAGAGCTGTTTCTTCTCTGGTCGCACAGCGAAGGGTCATAAACTGAACTACCCGATGGTGGAGTACTGCACACCGACCACCTCAGGAGAAGACATGCGGGATTTCACCAAAGTCTTAAAAAACAAGTTCCGCTCGAAAAAGTATTTCGCCAAGCACCCTCGCCTGGGGTACCTGCCCGTCCAGACGGTCCTCGAAGGAGACAACATGGAAACGCTCTGTCCATCACCGCAGCTCCCTCATGATGACACACACTCACGGATAGGGGAGTACGCCAACAGGCTGGCACAGATGGAGCGATCCAATGGCTCTCTGCCCACCGACAGCAGCTCGGCCACTGGAAGCATGGACGAGGAGCACGCTTTGATCCTGCAGTACTGCCAGACATTGGGAGGGGAGGGCTCATCTTTCAGCCAGCCACAAAGCCCCGCCCATATCAACAGGACCCCCGCCCACAACACCCACAGCCCCTCCTACCTGCTCCAGAGCCCCGCCCAGATTCTGCAGGCAGTGGAGAGGGAGGAGCGAGGAGAGCTGGAGCGAATCATAGCACGGCTGGAGGACGATCAGCGGGTTCTGCAGAGGGAGTATGAAGAACTGCGGTTTCAGTACGGTCAGCCTGGCGCCGCAGCTGCTAGCGGAGCCCCAGATGAAGCTGATCTGCTAGCTGAAGCTAAACTCCTGCGACAGCACAAGGGACGACTGGAGGCCCGCATGCAGATTCTGGAGGACCACAACAAACAGCTGGAGTCTCAGCTTTACCGACTGCGCCAGCTGCTGCATCAGCCCGAGTTAAACGGCACATCATCATCCAGCTCTCTCCATCAGGATGCAGCAGGACAGCCCGAAATCTCGGacGAGTTTCTCCATCAGTGTGCTAACAGTAACTCTGCTCTGGCGGAGGTTATGGATCAGATTAACCACAGTTTTCCTGCATGCTCTCCGTCGAGTGTGTCCTCAAGACCGAAGGTGAAGTGA
>TCONS_00042539
ATGTTCCAGCAGCACAAGTTGACAGTGAACTCTCAGCAGCTCTCGGTTCCAGAGATCATCAACTGTCTGACGTCAGTGTATGACGGCCTGGAGCAGGAGCACAAAGACCTGGTCAACGTGCCGCTGTGTGTGGACATGAGCCTCAACTGGCTGCTCAACGTCTACGACACGGGTCGCAGCGGGAAAATCCGCGTTCTGTCCATGAAGATTGGTCTGCTCTCTCTTTGCAAGGGTCATCTGGAGGAGAAATATAAATgtctgTTTAATCAGGTGGCGTCTGCGGGCGGGACGTGTGACCAGAGGCAGTTGGGTCTCCTTCTGCATGATGCCATTCAGATCCCCCGGCAGCTGGGCGAGGTGGCAGCGTTCGGCGGGAGCAACATCGAGCCCAGCGTCCGCAGCTGCTTCCAGCATGTGACCAATAAGGTTGAGCTGGAGCCGAGGCAGTTTATTGATTGGATGAGGCTGGAGCCGCAGTCTATGGTTTGGCTGCCGGTTCTACACCGAGTTGCTGCGGCAGAGACGGCGAAACATCAGGCCAAGTGCAACATCTGCAAAGAGTTCCCCATCGTCGGCTTCAGATATCGCAGTTTAAAGCACTTCAACTATGACGTCTGCCAGAGCTGTTTCTTCTCTGGTCGCACAGCGAAGGGTCATAAACTGAACTACCCGATGGTGGAGTACTGCACACCGACCACCTCAGGAGAAGACATGCGGGATTTCACCAAAGTCTTAAAAAACAAGTTCCGCTCGAAAAAGTATTTCGCCAAGCACCCTCGCCTGGGGTACCTGCCCGTCCAGACGGTCCTCGAAGGAGACAACATGGAAACTCCGGTCACTCTCATCAGCATGTGTCCGGAGCACTATGAGCTCTGTCCATCACCGCAGCTCCCTCATGATGACACACACTCACGGATAGGGGAGTACGCCAACAGGCTGGCACAGATGGAGCGATCCAATGGCTCTCTGCCCACCGACAGCAGCTCGGCCACTGGAAGCATGGACGAGGAGCACGCTTTGATCCTGCAGTACTGCCAGACATTGGGAGGGGAGGGCTCATCTTTCAGCCAGCCACAAAGCCCCGCCCATATCAACAGGACCCCCGCCCACAACACCCACAGCCCCTCCTACCTGCTCCAGAGCCCCGCCCAGATTCTGCAGGCAGTGGAGAGGGAGGAGCGAGGAGAGCTGGAGCGAATCATAGCACGGCTGGAGGACGATCAGCGGGTTCTGCAGAGGGAGTATGAAGAACTGCGGTTTCAGTACGGTCAGCCTGGCGCCGCAGCTGCTAGCGGAGCCCCAGATGAAGCTGATCTGCTAGCTGAAGCTAAACTCCTGCGACAGCACAAGGGACGACTGGAGGCCCGCATGCAGATTCTGGAGGACCACAACAAACAGCTGGAGTCTCAGCTTTACCGACTGCGCCAGCTGCTGCATCAGCCCGAGTTAAACGGCACATCATCATCCAGCTCTCTCCATCAGGATGCAGCAGGACAGCCCGAAATCTCGGacGAGTTTCTCCATCAGTGTGCTAACAGTAACTCTGCTCTGGCGGAGGTTATGGATCAGATTAACCACAGTTTTCCTGCATGCTCTCCGTCGAGTGTGTCCTCAAGACCGAAGGTGAAGTGA
>TCONS_00042541
GCTGGCACAGATGGAGCGATCCAATGGCTCTCTGCCCACCGACAGCAGCTCGGCCACTGGAAGCATGGACGAGGAGCACGCTTTGATCCTGCAGTACTGCCAGACATTGGGAGGGGAGGGCTCATCTTTCAGCCAGCCACAAAGCCCCGCCCATATCAACAGGACCCCCGCCCACAACACCCACAGCCCCTCCTACCTGCTCCAGAGCCCCGCCCAGATTCTGCAGGCAGTGGAGAGGGAGGAGCGAGGAGAGCTGGAGCGAATCATAGCACGGCTGGAGGACGATCAGCGGGTTCTGCAGAGGGAGTATGAAGAACTGCGGTTTCAGTACGGTCAGCCTGGCGCCGCAGCTGCTAGCGGAGCCCCAGATGAAGCTGATCTGCTAGCTGAAGCTAAACTCCTGCGACAGCACAAGGGACGACTGGAGGCCCGCATGCAGATTCTGGAGGACCACAACAAACAGCTGGAGTCTCAGCTTTACCGACTGCGCCAGCTGCTGCATCAGCCCGAGTTAAACGGCACATCATCATCCAGCTCTCTCCATCAGGATGCAGCAGGACAGCCCGAAATCTCGGCGTCGAGTGTGTCCTCAAGACCGAAGGTGAAGTGAGCCGTAATCCAGAAGATCCCCATTCCCGAGATGCAGATTCCCGTCTGTTTCCCTCCAGCCCAAAGACTCTGGAACAGACCACGCTCCCATTCAGAAACTAGGACTACTGCATCTGTCTGTACTATGCAACTGTACATTTGATCAACACATGTAGATTGTACGTGAGGTGTATCTGCCCGTTCTTTTCATACTCCAGATGATTATTTAGGGTTACGGGGGGGCATTAATCATGTATCCTGTATGCTTTTATTTCTGTGCTCACCGAGGAATCCATCTCTCGCGTCTTTCTACACATGTGGTTTTTTCGTTCAGTCAGAAAATGTGGCGGAGATTAGGAGGAATTGGTCTCGTGATGCTGAAGTGTTCGCGCATGTTGCCCCCCAGCATATTTCTGTTGACGTTTTGACAGTGTTTGCCGTGAAAACTCcctttaaagcgttgtttttgaGCATTTTAAACCCTCACTGCATTTCTAGAGCGCACATACAGATGATGTACAACACAAATGCTTAAAGAAACGAAAAAGAAAACACCCTTTTGTGCCTATAAAGCGTCCATTCCAGGAGAGATGCCGCATTTCTCAAGAAAAAAGTCATGTAGAGAGATTATATTATAAGAGTCGGATGTAGGACAATGTGGATTTCCGGGATGTTTGGCCCCAAGATGATTTATCTTTGTGTAgtatagttttataaataaaaaatttaattagagaAAGCCATGATTGCCTTGCTACCTCAGACATTAATCAATCACTCATTGGTGTGACTGTCGATTGATTTCCAAAATGGACGTACGCTTCCCATATCCCTGACAATGACGTTGTGCTTCTGCCTTGTTTTCCTCAgcggttgttttgtttttctacacGGTGTATTTTGTGGTGTGCTCCCCCCCCTTCAGTGAAGTGCTAGATTTGAACATTACTGTAACACCGTATTCTGATCTAGTGAAGTCACCGATGCTGTGCTGTTCTGATAGATCCATTAGACCGACCACACTACATGTAATGAGGTTCCACACATTTTATTCGAATAAAGTTTTTATAATGAGA

Function

symbol description
utrn Predicted to enable actin binding activity and zinc ion binding activity. Predicted to be located in cytoplasm; cytoskeleton; and postsynaptic membrane. Is expressed in lateral line system; muscle; notochord; pronephric duct; and somite border. Orthologous to human UTRN (utrophin).

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070228-6 Predicted to enable actin binding activity and zinc ion binding activity. Predicted to be located in cytoplasm; cytoskeleton; and postsynaptic membrane. Is expressed in lateral line system; muscle; notochord; pronephric duct; and somite border. Orthologous to human UTRN (utrophin).

Ensembl:

ensembl_id ENSDARG00000100222

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042540 False 1593 mRNA 0.56 14 1349277 1443781
TCONS_00042539 False 1632 mRNA 0.56 15 1349277 1443781
TCONS_00042541 True 1664 mRNA 0.48 6 1414893 1444835

Neighbor

gene id symbol gene type direction distance location
XLOC_021394 utrn coding upstream 12312 1181248 ~ 1336965 (+)
XLOC_021393 CABZ01079873.1 coding upstream 197219 1147162 ~ 1152058 (+)
XLOC_021392 slc34a2b coding upstream 244282 1078072 ~ 1104995 (+)
XLOC_021391 si:zfos-905g2.1 coding upstream 306460 1029450 ~ 1042817 (+)
XLOC_021390 frmd4bb coding upstream 510933 799100 ~ 838344 (+)
XLOC_021396 NA coding downstream 193454 1638289 ~ 1638981 (+)
XLOC_021397 stxbp3 coding downstream 216908 1661743 ~ 1698431 (+)
XLOC_021398 rabggta coding downstream 257789 1702624 ~ 1726560 (+)
XLOC_021399 tgm1 coding downstream 285828 1730663 ~ 1748141 (+)
XLOC_021400 NA coding downstream 606066 2050901 ~ 2055246 (+)
XLOC_021385 NA non-coding upstream 751674 545263 ~ 597603 (+)
XLOC_021384 CU929146.2 non-coding upstream 906925 442237 ~ 442352 (+)
XLOC_021383 CU929146.1 non-coding upstream 936618 412542 ~ 412659 (+)
XLOC_021406 NA non-coding downstream 1018334 2463169 ~ 2467474 (+)
XLOC_021408 NA non-coding downstream 1109463 2554298 ~ 2555505 (+)
XLOC_021410 NA non-coding downstream 1136213 2581048 ~ 2593612 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) utrn LOC106608002 misc NC_048568.1 CM023222.3 24648025 ~ 24989137 (+)
mexican tetra (Astyanax mexicanus) G136783 NA non-coding NC_035911.1 CM008314.1 32896636 ~ 32898546 (-)