G203415


Basic Information

Item Value
gene id G203415
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91618362 ~ 91644022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU230225
AGTAAATATTcctgtttttattttcattgttttttattAGTTTTTCCTGTGAAGCACATTGCATTGCATTCCTGTCTGAAATGTGCTatataaataaagtttgatttgattctctTCACATAGCATGGCAGGGAAGATTCATTAGCAAGTACAACACATCCAATAGGTATCCAATAGATACAGAGCTATGCAAAATTGATTTGCGTGCCAACACAGACTTCTGGTTTGTTTACACCACTTTACCTTACTCTTTCCCTCAGCTGACTTCCTTCAATTACATTACCAAACTCTTCCTCCCACTCTAACTAAATCTACACCTGGCCCAATCCCAACCCTTTGCTTCATCCAAAGGTGGGATGCACGTTGGCAACAATATGACTCATCAATTGCAGAATGCAAGACATTATCTTCACCGTATACTGTTCAGGTTCCAATACAAGCGAAGGAAACATCAATTTAAAAAGGCAAAAATAAACTAAACCAAACCAAACCCAATCCACCCGAGCCCCCCATACTGTGCACTCTGTAAACCCACTTTGATGATAGTTGTGTCTAGAGCACGCTCTGTTCCTAATCTCCTCTACTCTGAAGAGTCTCTGGTGTCTGGTTCAAGACCGTGGAGCCTAGGGGTGAAATGGGAGGTCTTGTTTTGACACTGTGGGAAGGCTGACTTTGTTCTTACTTATCTCCCTTTTCATTAGAAGTCAACCCCCATACTGCTACAGCTATTATTgcttctgctgctactactgctactactactactgattctactgctgctactactactgttgctactgctactactactgctgctactactactactgctgctactactactgctactactagtactgttaAAACTGCTAATTAAATTGTTGCTAGTGGTTGTACTAAAGTATCCTCTAAGTTAATCCTTCACAAGCTGATTTTGTTTCCATTGTGAACCTAgctagtcaatatacagtggcTGGCGAAAGTATTctccccccttggcatttttcctattttgttgccttataacctgtaattaaaatagattttttgggggggcttgtatcatttgatttacacaacatgccaacATGATGATGCAAAatttgttttattgtgaaacaaacaagaaataagaccaaaaaaaatctaacttgagcgtgcataataattcaaccccccaaagtcaatacttagtagagccacattttgcagcaattacagctgcaagtctcttggggtatgtctctataagcttggaacatctagccactgggatttttgaccattcttcaaggcaaaactaatcgagctccttcaagttggatgggttccactggtgtacagcaatctttaagtcataccacagattctcaattggattgaggtctgggctttaactaggccattccaagacatttaaatgtttccccttaaaccactcgagtgctgctttatcagtatgcttagggtcattgtcctgctggaaggtgaacttcCGTCcctgtctcaaatctctggaagactgaaacaggtttccctcaagaatttccctgtgttTAGCaacatccatcattccttcaattctgaccagtttcccagtccctgccgattaaAAACATcctccaaagcatgatgctgccaccaccatgcttcactgtggggatggtgttctcggggtgatgggagTTGTTGGATTTGCGCCAGAAATAGCATTTTCCTTAACAGCCAGAGTACCTTCTCCCATATGTTTTTGAAGTCTCCCACATgctttttggcgaacaccaaacatgtttgcttattttttcctttaagcaatggcttttttcttgccactcttccataaagcccagctctgtggagtgtacggcttgtCCTACGGAaaaatactccaatctccgctgtggagctttgcagctcctccagggttatcaaatcaaatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaacagttgaaactggagcagcagcactgccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctgaggcatggtcctagggcttaggtcctccgagagagagaaagagagaaagagagaattagagagagcacacttaaattcacacaggacaccgaataggacaggagaagtaaaccagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggaagctgagacaggaggggtcaggagacactgtggccccatccgaggacacccccggacagggccaaagagggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatcttcagtatagcccacaaagatctccgccacggcacaacccaaggggggcgccaacccagacaggatgaccacatcagtgaatcaacccactcaggtgacgcacaccctccagggacggtatgagagagccccagtaagccagtgactcagcccctgtaatagggttagaggcagagaatcccagtggaaagaggggaaccggccaggcagagacagcaagggcggttcgttgctccagagcctttccgttccccttcccactcctgggccagaccacATGCACAAGAAatgagtcttcagtaaggacttaaaggttggaccgagtttgcgtctctgacatgggtaggcagaccgttccataaaaatggagctctataggagaaagccctgcctccagctgtttgcttagaaattctagggacaattaggaggcctgcgtcttgtgaccgtagcgtacgtgtaggtatgtacggcaggaccaaatcagagagataggtaggagcaaaaccatgtaatgctttgtaggttagcagtaaaaccttgaaatcagcccttgctttgacaggaagccagtgtagagaggctagcactggagtaatatgatcaaatttttgggttctagtcaggattctagcagccgtatttagcactaactgaagtttatttagtgctttatccgggtagccggaaagtagagcattgcagtagtctaacctagaagtgacaaaagcatggattaatttttctgcatcatttttggacagaaagtttctgatttttgcaatgttacgtagatggaaaaaagctgtccttgaaatggtcttgatatgttcttcaaaagagagatcagggtccagagtaacaccgaggtccttcacagttttttttgagacgactgtacaaccattaagattaattgtcagattcaacagaagatctctttgtttcttgggacctagaacaagcatctctgttttgtccgagtttaaaagtagaaagtttgcagccatccacttccttatgtctgaaacacatgcttctagcaagggcaattttggggcttcaccatgtttcattgaaatgtacagctgtgtgtcatccgcatagcagtgaaagttaacattatgttttcgaataacatctccaagaggtaaaatatatagtgaaaacaatagtggtcctaaaacggaaccttgaggaacaccgaaatttacatgATGATTAAT

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230225 True 3827 lncRNA 0.43 2 91618362 91644022

Neighbor

gene id symbol gene type direction distance location
rassf9 rassf9 coding upstream 27232 91582584 ~ 91591130 (+)
mgat4c LOC106561589 coding upstream 74597 91366282 ~ 91543765 (+)
LOC110499641 LOC106561583 coding upstream 378625 91235465 ~ 91239737 (+)
cep290 cep290 coding upstream 405093 91157461 ~ 91213269 (+)
kitlga LOC106561562 coding upstream 647044 90938346 ~ 90971318 (+)
slc6a15 LOC106561596 coding downstream 110937 91754959 ~ 91779981 (+)
LOC110499735 LOC106561597 coding downstream 192792 91836814 ~ 91852352 (+)
LOC110502363 LOC106561595 coding downstream 209830 91853852 ~ 91933354 (+)
LOC110502371 LOC106561599 coding downstream 293130 91937152 ~ 92008067 (+)
smc1b LOC106561601 coding downstream 384412 92028434 ~ 92049230 (+)
G203281 NA non-coding upstream 204814 91412013 ~ 91413548 (+)
G203251 NA non-coding upstream 249359 91368559 ~ 91369003 (+)
G203197 NA non-coding upstream 338403 91279751 ~ 91279959 (+)
G202844 NA non-coding upstream 363573 91252360 ~ 91254789 (+)
G203503 NA non-coding downstream 124738 91768760 ~ 91769152 (+)
G203547 NA non-coding downstream 178297 91822319 ~ 91823796 (+)
G203559 NA non-coding downstream 209191 91853213 ~ 91853577 (+)
G203579 NA non-coding downstream 217371 91861393 ~ 91861963 (+)
G203561 NA non-coding downstream 274848 91918870 ~ 91919819 (+)
G202185 NA other upstream 900941 90716942 ~ 90717421 (+)
G202039 NA other upstream 1170789 90447118 ~ 90447573 (+)
LOC110499234 rbl2 other upstream 2195924 89395057 ~ 89422438 (+)
G203438 LOC106561592 other downstream 24814 91668836 ~ 91671899 (+)
G203551 NA other downstream 182827 91826849 ~ 91847400 (+)
G203646 cpa2 other downstream 377733 92021755 ~ 92024742 (+)
G204240 ckap5 other downstream 513253 92157275 ~ 92159903 (+)
G204593 NA other downstream 1037324 92681346 ~ 92682355 (+)

Expression


Co-expression Network