XLOC_021557 (snphb)


Basic Information

Item Value
gene id XLOC_021557
gene name snphb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16620801 ~ 16642181 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042795
GACGTTTTCTCCTTTCTCTTAACTGTGAGAAAGAGTCGCAAAGGCTAAGAGGGAAAATGTTGCATATCTGACTCTGAGATGTAACTGCTttttatcacatttaaaaaaagagtttagGGATGTATGTATATATCGCAAATATGAACTCTGAATTGTGAGATTTGAAAGTCACAGTTACCTTTGTGTGCTTTCTGTTCTGTTGCATTAAACGATCCCATACACATcacctttttaaatatattttttccaaactCCAAGTGATAGTGTGGTTCCCTTTAAGTAGACTGTCGTAATATTACGTATCTGCTTTCATCTCGATGCTCGTCCTCCCTCAAGCAAGCTGTCAAACAGAGCTCTCGCGCCagaatcatcatcattatcatcatctgcAGCTCCGCCCCGTCGACTCGCGCTCGCGAGCAGCGGAGCACCGCTGTGGTGGAGTCCTTGACGGGGACGAGCACCCGGGTAAACACGACAAAACACCGCTGTTTACATGAAGACAAGCTGATTCTCGCTGGAAGGCTGCAACCAGagaggaagaggaagaagacAGATCCAGCTGAAGAAGGAGAAGGAGCGTAGACGACTGCTGACTCCATGTCTTCGCCTTCAAATAAAAGATCTGGTTCTGGATCACGCAATTTTGACTATTGCAGGTTTATAGAGCTAGACTACACACCCATGGAGTCAGGCATTATGGTCTCTATGAGACAGAGCAGAGGATTTCTGACACCAAAGTCCCCGGAACGCCACTGTCGACGGAGTCCAGCACCTGTCAGTAACCGTGATCCCTATGGAAATGCCTCTCTCAGCAGCAGTAGCAATTCAGGGTCATGCAAGGGCAGTGATGGAAGCCCAACCCATAGGCGTCACATAAAATACACCTCCTGCAATGATAACCATGGCATTCGACCTCCTCCTCCTGAGCAATACCTCACCCCACTGCAACAGAAAGAGGTGTGCATCAGGCACCTGAGAGCACGGCTTAAAGAGACCATCGAAAGACTGCAGGACAGGGACTCTGAGATCGATGAGTTGCGTACTCAGCTGACTCGTATGCAAGAGGACTGGATTGAAGAGGAATGCCACCGTGTGGAGGCCCAGCTGGCTCTGAAGGAGGCCCGCAGGGAGATTCACCAGCTTAAAGAAGTTGTTGATGTTGTCAAATCCAGTCTGGGAGATACTGACACAGGGGTGCAGAAGGGCTTCCAAGATATAAACCTACAGAACCACAAACTGGAGTCTTTATTGCAAAGCATGGAGTTGGCTCAGATCGGCACTACCAAAACAGGAGAAGCCCTAGCAGGTGGAGGATTGGTGGGGGCAGGGCTGGAGGTCAGCGAGGGCCTGGCGGGGTCTTCCGAAGGCTCCCCAGCTCGCTCGCTTACCCGCAGCTCTACCTACACCAAGTTGAGTGATCAAGGTGGCCCGGAACGTGAGAGTAACGAAAACGGGTGTGACATTCCATGTTTGTCAGGCGAGGGCACGCAAGACAGCGGGTTTGTTTGCTGTGGAGAGAGTGGGAGAGGAGCCAGCAAGGCAGATTTGCTCCTGGAGGCTGCATTTCTGTCTCAAGAGACAGCCTCGCTGCTCAATGCGTACTCCCGCCTGCCGCATTCCTCCACCTATGAAGGACTGTGCAGCAGTGAGCCGAGAGTTGTGCCACTCCGCTGCAGTAGTATCGGGGCGGGGGCCAGTGTTAGTTTAAGCCATCCCTGTCTGTCACATCATCACTTATATCTTCACCACCTTCGTGAGCAAGGCATTCAAACTGAATATGACCATGCCCCAGCTTCTGCTCCTGCCCATGGTCCTAGTACATCATTTAACTCTGATCTAGACACTATTGCCGAGCGCACGTTCCGCTCTCAGGCCTGCAGTCCAACCTCCACATGGATGTCTGATGAAGGAGATGATCTGGAGTCAGCAGCCACAGAATCAGCTATTACAGCAACAGTTGCTACAACTTCTGTTGTTGCAGACTTTTCCACCAAGTCCGCACCAGTAGCAATGGGGAATTGGATGCCAACTGCATCTGATTCCAAAGGAGCTGCAACTTTTCCATTGATGCCTATTGATTCCCCTGACAAGGAGACTAGTTTTTCAGAGCCCCTTACAGACTTGCCAATCAGCACAACAGCTTTGACCACAGAGACCATTGGATCACCAGTAACCAACTCAACTGTTCAACCACAACCTATAACAGACCCTTTGCCAAACCCTGGCACATCCCCTTGCTCTATGCAGCCTTTGGTGGGGACAGAGGAGGACTCCCTTCCTCAGACCACTCAGCCTCACAGTGTATTAACAGAGACTGTGGTTCCAGGGGATAATGTGATAAATATAGGcgcagatgatgaagatgaggggGATGAAGGTGCAACGAACACAGATTCCAAATCATCTGGCTGTGGTTTACCAGTCAAGAACTACTGGAGTCGGCACTTCCTAGTGGATTTGCTTGCAGTGGTCGTGCCAGTGGTTCCCACCGTGGCATGGTTCTGTCGGGGTCCACATCGTGATGGTCAGCCAATTTACCATATTGGTTCTCTTTTGCGTGGTTGCTGCACCGTGGCCCTCCATTCACTTCGTCGAGGAGGTGGCCTTCGCCACTACCCTGCAGGAGGAGGTGGTCCAGGGGGAATGAATATATGA
>TCONS_00042794
GACGTTTTCTCCTTTCTCTTAACTGTGAGAAAGAGTCGCAAAGGCTAAGAGGGAAAATGTTGCATATCTGACTCTGAGATGTAACTGCTttttatcacatttaaaaaaagagtttagGGATGTATGTATATATCGCAAATATGAACTCTGAATTGTGAGATTTGAAAGTCACAGTTACCTTTGTGTGCTTTCTGTTCTGTTGCATTAAACGATCCCATACACATcacctttttaaatatattttttccaaactCCAAGTGATAGTGTGGTTCCCTTTAAGTAGACTGTCGTAATATTACGTATCTGCTTTCATCTCGATGCTCGTCCTCCCTCAAGCAAGCTGTCAAACAGAGCTCTCGCGCCagaatcatcatcattatcatcatctgcAGCTCCGCCCCGTCGACTCGCGCTCGCGAGCAGCGGAGCACCGCTGTGGTGGAGTCCTTGACGGGGACGAGCACCCGGGTAAACACGACAAAACACCGCTGTTTACATGAAGACAAGCTGATTCTCGCTGGAAGGCTGCAACCAGagaggaagaggaagaagacAGATCCAGCTGAAGAAGGAGAAGGAGCGTAGACGACTGCTGACTCCATGTCTTCGCCTTCAAATAAAAGATCTGGTTCTGGATCACGCAAACGGAGTCCAGCACCTGTCAGTAACCGTGATCCCTATGGAAATGCCTCTCTCAGCAGCAGTAGCAATTCAGGGTCATGCAAGGGCAGTGATGGAAGCCCAACCCATAGGCGTCACATAAAATACACCTCCTGCAATGATAACCATGGCATTCGACCTCCTCCTCCTGAGCAATACCTCACCCCACTGCAACAGAAAGAGGTGTGCATCAGGCACCTGAGAGCACGGCTTAAAGAGACCATCGAAAGACTGCAGGACAGGGACTCTGAGATCGATGAGTTGCGTACTCAGCTGACTCGTATGCAAGAGGACTGGATTGAAGAGGAATGCCACCGTGTGGAGGCCCAGCTGGCTCTGAAGGAGGCCCGCAGGGAGATTCACCAGCTTAAAGAAGTTGTTGATGTTGTCAAATCCAGTCTGGGAGATACTGACACAGGGGTGCAGAAGGGCTTCCAAGATATAAACCTACAGAACCACAAACTGGAGTCTTTATTGCAAAGCATGGAGTTGGCTCAGATCGGCACTACCAAAACAGGAGAAGCCCTAGCAGGTGGAGGATTGGTGGGGGCAGGGCTGGAGGTCAGCGAGGGCCTGGCGGGGTCTTCCGAAGGCTCCCCAGCTCGCTCGCTTACCCGCAGCTCTACCTACACCAAGTTGAGTGATCAAGGTGGCCCGGAACGTGAGAGTAACGAAAACGGGTGTGACATTCCATGTTTGTCAGGCGAGGGCACGCAAGACAGCGGGTTTGTTTGCTGTGGAGAGAGTGGGAGAGGAGCCAGCAAGGCAGATTTGCTCCTGGAGGCTGCATTTCTGTCTCAAGAGACAGCCTCGCTGCTCAATGCGTACTCCCGCCTGCCGCATTCCTCCACCTATGAAGGACTGTGCAGCAGTGAGCCGAGAGTTGTGCCACTCCGCTGCAGTAGTATCGGGGCGGGGGCCAGTGTTAGTTTAAGCCATCCCTGTCTGTCACATCATCACTTATATCTTCACCACCTTCGTGAGCAAGGCATTCAAACTGAATATGACCATGCCCCAGCTTCTGCTCCTGCCCATGGTCCTAGTACATCATTTAACTCTGATCTAGACACTATTGCCGAGCGCACGTTCCGCTCTCAGGCCTGCAGTCCAACCTCCACATGGATGTCTGATGAAGGAGATGATCTGGAGTCAGCAGCCACAGAATCAGCTATTACAGCAACAGTTGCTACAACTTCTGTTGTTGCAGACTTTTCCACCAAGTCCGCACCAGTAGCAATGGGGAATTGGATGCCAACTGCATCTGATTCCAAAGGAGCTGCAACTTTTCCATTGATGCCTATTGATTCCCCTGACAAGGAGACTAGTTTTTCAGAGCCCCTTACAGACTTGCCAATCAGCACAACAGCTTTGACCACAGAGACCATTGGATCACCAGTAACCAACTCAACTGTTCAACCACAACCTATAACAGACCCTTTGCCAAACCCTGGCACATCCCCTTGCTCTATGCAGCCTTTGGTGGGGACAGAGGAGGACTCCCTTCCTCAGACCACTCAGCCTCACAGTGTATTAACAGAGACTGTGGTTCCAGGGGATAATGTGATAAATATAGGcgcagatgatgaagatgaggggGATGAAGGTGCAACGAACACAGATTCCAAATCATCTGGCTGTGGTTTACCAGTCAAGAACTACTGGAGTCGGCACTTCCTAGTGGATTTGCTTGCAGTGGTCGTGCCAGTGGTTCCCACCGTGGCATGGTTCTGTCGGGGTCCACATCGTGATGGTCAGCCAATTTACCATATTGGTTCTCTTTTGCGTGGTTGCTGCACCGTGGCCCTCCATTCACTTCGTCGAGGAGGTGGCCTTCGCCACTACCCTGCAGGAGGAGGTGGTCCAGGGGGAATGAATATATGA
>TCONS_00042797
ATGCTGTCATCTCCCACTGCGTCCCCCGTACGGAGTCCAGCACCTGTCAGTAACCGTGATCCCTATGGAAATGCCTCTCTCAGCAGCAGTAGCAATTCAGGGTCATGCAAGGGCAGTGATGGAAGCCCAACCCATAGGCGTCACATAAAATACACCTCCTGCAATGATAACCATGGCATTCGACCTCCTCCTCCTGAGCAATACCTCACCCCACTGCAACAGAAAGAGGTGTGCATCAGGCACCTGAGAGCACGGCTTAAAGAGACCATCGAAAGACTGCAGGACAGGGACTCTGAGATCGATGAGTTGCGTACTCAGCTGACTCGTATGCAAGAGGACTGGATTGAAGAGGAATGCCACCGTGTGGAGGCCCAGCTGGCTCTGAAGGAGGCCCGCAGGGAGATTCACCAGCTTAAAGAAGTTGTTGATGTTGTCAAATCCAGTCTGGGAGATACTGACACAGGGGTGCAGAAGGGCTTCCAAGATATAAACCTACAGAACCACAAACTGGAGTCTTTATTGCAAAGCATGGAGTTGGCTCAGATCGGCACTACCAAAACAGGAGAAGCCCTAGCAGGTGGAGGATTGGTGGGGGCAGGGCTGGAGGTCAGCGAGGGCCTGGCGGGGTCTTCCGAAGGCTCCCCAGCTCGCTCGCTTACCCGCAGCTCTACCTACACCAAGTTGAGTGATCAAGGTGGCCCGGAACGTGAGAGTAACGAAAACGGGTGTGACATTCCATGTTTGTCAGGCGAGGGCACGCAAGACAGCGGGTTTGTTTGCTGTGGAGAGAGTGGGAGAGGAGCCAGCAAGGCAGATTTGCTCCTGGAGGCTGCATTTCTGTCTCAAGAGACAGCCTCGCTGCTCAATGCGTACTCCCGCCTGCCGCATTCCTCCACCTATGAAGGACTGTGCAGCAGTGAGCCGAGAGTTGTGCCACTCCGCTGCAGTAGTATCGGGGCGGGGGCCAGTGTTAGTTTAAGCCATCCCTGTCTGTCACATCATCACTTATATCTTCACCACCTTCGTGAGCAAGGCATTCAAACTGAATATGACCATGCCCCAGCTTCTGCTCCTGCCCATGGTCCTAGTACATCATTTAACTCTGATCTAGACACTATTGCCGAGCGCACGTTCCGCTCTCAGGCCTGCAGTCCAACCTCCACATGGATGTCTGATGAAGGAGATGATCTGGAGTCAGCAGCCACAGAATCAGCTATTACAGCAACAGTTGCTACAACTTCTGTTGTTGCAGACTTTTCCACCAAGTCCGCACCAGTAGCAATGGGGAATTGGATGCCAACTGCATCTGATTCCAAAGGAGCTGCAACTTTTCCATTGATGCCTATTGATTCCCCTGACAAGGAGACTAGTTTTTCAGAGCCCCTTACAGACTTGCCAATCAGCACAACAGCTTTGACCACAGAGACCATTGGATCACCAGTAACCAACTCAACTGTTCAACCACAACCTATAACAGACCCTTTGCCAAACCCTGGCACATCCCCTTGCTCTATGCAGCCTTTGGTGGGGACAGAGGAGGACTCCCTTCCTCAGACCACTCAGCCTCACAGTGTATTAACAGAGACTGTGGTTCCAGGGGATAATGTGATAAATATAGGcgcagatgatgaagatgaggggGATGAAGGTGCAACGAACACAGATTCCAAATCATCTGGCTGTGGTTTACCAGTCAAGAACTACTGGAGTCGGCACTTCCTAGTGGATTTGCTTGCAGTGGTCGTGCCAGTGGTTCCCACCGTGGCATGGTTCTGTCGGGGTCCACATCGTGATGGTCAGCCAATTTACCATATTGGTTCTCTTTTGCGTGGTTGCTGCACCGTGGCCCTCCATTCACTTCGTCGAGGAGGTGGCCTTCGCCACTACCCTGCAGGAGGAGGTGGTCCAGGGGGAATGAATATATGA
>TCONS_00042796
ATGCTGTCATCTCCCACTGCGTCCCCCGTTTTTGACTATTGCAGGTTTATAGAGCTAGACTACACACCCATGGAGTCAGGCATTATGGTCTCTATGAGACAGAGCAGAGGATTTCTGACACCAAAGTCCCCGGAACGCCACTGTCGACGGAGTCCAGCACCTGTCAGTAACCGTGATCCCTATGGAAATGCCTCTCTCAGCAGCAGTAGCAATTCAGGGTCATGCAAGGGCAGTGATGGAAGCCCAACCCATAGGCGTCACATAAAATACACCTCCTGCAATGATAACCATGGCATTCGACCTCCTCCTCCTGAGCAATACCTCACCCCACTGCAACAGAAAGAGGTGTGCATCAGGCACCTGAGAGCACGGCTTAAAGAGACCATCGAAAGACTGCAGGACAGGGACTCTGAGATCGATGAGTTGCGTACTCAGCTGACTCGTATGCAAGAGGACTGGATTGAAGAGGAATGCCACCGTGTGGAGGCCCAGCTGGCTCTGAAGGAGGCCCGCAGGGAGATTCACCAGCTTAAAGAAGTTGTTGATGTTGTCAAATCCAGTCTGGGAGATACTGACACAGGGGTGCAGAAGGGCTTCCAAGATATAAACCTACAGAACCACAAACTGGAGTCTTTATTGCAAAGCATGGAGTTGGCTCAGATCGGCACTACCAAAACAGGAGAAGCCCTAGCAGGTGGAGGATTGGTGGGGGCAGGGCTGGAGGTCAGCGAGGGCCTGGCGGGGTCTTCCGAAGGCTCCCCAGCTCGCTCGCTTACCCGCAGCTCTACCTACACCAAGTTGAGTGATCAAGGTGGCCCGGAACGTGAGAGTAACGAAAACGGGTGTGACATTCCATGTTTGTCAGGCGAGGGCACGCAAGACAGCGGGTTTGTTTGCTGTGGAGAGAGTGGGAGAGGAGCCAGCAAGGCAGATTTGCTCCTGGAGGCTGCATTTCTGTCTCAAGAGACAGCCTCGCTGCTCAATGCGTACTCCCGCCTGCCGCATTCCTCCACCTATGAAGGACTGTGCAGCAGTGAGCCGAGAGTTGTGCCACTCCGCTGCAGTAGTATCGGGGCGGGGGCCAGTGTTAGTTTAAGCCATCCCTGTCTGTCACATCATCACTTATATCTTCACCACCTTCGTGAGCAAGGCATTCAAACTGAATATGACCATGCCCCAGCTTCTGCTCCTGCCCATGGTCCTAGTACATCATTTAACTCTGATCTAGACACTATTGCCGAGCGCACGTTCCGCTCTCAGGCCTGCAGTCCAACCTCCACATGGATGTCTGATGAAGGAGATGATCTGGAGTCAGCAGCCACAGAATCAGCTATTACAGCAACAGTTGCTACAACTTCTGTTGTTGCAGACTTTTCCACCAAGTCCGCACCAGTAGCAATGGGGAATTGGATGCCAACTGCATCTGATTCCAAAGGAGCTGCAACTTTTCCATTGATGCCTATTGATTCCCCTGACAAGGAGACTAGTTTTTCAGAGCCCCTTACAGACTTGCCAATCAGCACAACAGCTTTGACCACAGAGACCATTGGATCACCAGTAACCAACTCAACTGTTCAACCACAACCTATAACAGACCCTTTGCCAAACCCTGGCACATCCCCTTGCTCTATGCAGCCTTTGGTGGGGACAGAGGAGGACTCCCTTCCTCAGACCACTCAGCCTCACAGTGTATTAACAGAGACTGTGGTTCCAGGGGATAATGTGATAAATATAGGcgcagatgatgaagatgaggggGATGAAGGTGCAACGAACACAGATTCCAAATCATCTGGCTGTGGTTTACCAGTCAAGAACTACTGGAGTCGGCACTTCCTAGTGGATTTGCTTGCAGTGGTCGTGCCAGTGGTTCCCACCGTGGCATGGTTCTGTCGGGGTCCACATCGTGATGGTCAGCCAATTTACCATATTGGTTCTCTTTTGCGTGGTTGCTGCACCGTGGCCCTCCATTCACTTCGTCGAGGAGGTGGCCTTCGCCACTACCCTGCAGGAGGAGGTGGTCCAGGGGGAATGAATATATGA
>TCONS_00042798
TGGAACAGACGGAGTCCAGCACCTGTCAGTAACCGTGATCCCTATGGAAATGCCTCTCTCAGCAGCAGTAGCAATTCAGGGTCATGCAAGGGCAGTGATGGAAGCCCAACCCATAGGCGTCACATAAAATACACCTCCTGCAATGATAACCATGGCATTCGACCTCCTCCTCCTGAGCAATACCTCACCCCACTGCAACAGAAAGAGGTGTGCATCAGGCACCTGAGAGCACGGCTTAAAGAGACCATCGAAAGACTGCAGGACAGGGACTCTGAGATCGATGAGTTGCGTACTCAGCTGACTCGTATGCAAGAGGACTGGATTGAAGAGGAATGCCACCGTGTGGAGGCCCAGCTGGCTCTGAAGGAGGCCCGCAGGGAGATTCACCAGCTTAAAGAAGTTGTTGATGTTGTCAAATCCAGTCTGGGAGATACTGACACAGGGGTGCAGAAGGGCTTCCAAGATATAAACCTACAGAACCACAAACTGGAGTCTTTATTGCAAAGCATGGAGTTGGCTCAGATCGGCACTACCAAAACAGGAGAAGCCCTAGCAGGTGGAGG

Function

symbol description
snphb Predicted to enable syntaxin-1 binding activity. Acts upstream of or within with a positive effect on maintenance of mitochondrion location. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule and mitochondrion. Is expressed in brain; eye; and retinal ganglion cell layer. Orthologous to human SNPH (syntaphilin).

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0005881 cytoplasmic microtubule cellular_component
GO:0005739 mitochondrion cellular_component
GO:0017075 syntaxin-1 binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-92 Predicted to enable syntaxin-1 binding activity. Acts upstream of or within with a positive effect on maintenance of mitochondrion location. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule and mitochondrion. Is expressed in brain; eye; and retinal ganglion cell layer. Orthologous to human SNPH (syntaphilin).

Ensembl:

ensembl_id ENSDARG00000075539

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042795 False 2658 mRNA 0.50 6 16620801 16642181
TCONS_00042794 False 2541 mRNA 0.51 5 16620801 16642181
TCONS_00042797 False 1926 mRNA 0.53 4 16633951 16642181
TCONS_00042796 False 2043 mRNA 0.52 5 16633951 16642181
TCONS_00042798 True 563 mRNA 0.52 3 16638639 16640839

Neighbor

gene id symbol gene type direction distance location
XLOC_021555 ntsr1 coding upstream 95103 16430559 ~ 16525698 (+)
XLOC_021556 CU041345.1 coding upstream 174761 16444961 ~ 16446040 (+)
XLOC_021554 NA coding upstream 213375 16406558 ~ 16407426 (+)
XLOC_021553 AL928725.1 coding upstream 263572 16356708 ~ 16357229 (+)
XLOC_021552 NA coding upstream 341307 16272565 ~ 16279494 (+)
XLOC_021558 fbxo44 coding downstream 106625 16748806 ~ 16757755 (+)
XLOC_021559 si:rp71-1k13.6 coding downstream 118664 16760845 ~ 16773279 (+)
XLOC_021560 zgc:153722 coding downstream 132408 16774589 ~ 16788230 (+)
XLOC_021561 NA coding downstream 155919 16798100 ~ 16798722 (+)
XLOC_021562 zgc:114081 coding downstream 165028 16807209 ~ 16811727 (+)
XLOC_021551 NA non-coding upstream 352063 16267497 ~ 16268738 (+)
XLOC_021565 AL732515.2 non-coding downstream 216736 16858917 ~ 16859033 (+)
XLOC_021571 BX927275.1 non-coding downstream 504134 17146315 ~ 17211806 (+)
XLOC_021573 NA non-coding downstream 612317 17254498 ~ 17254757 (+)
XLOC_021576 NA non-coding downstream 770344 17412525 ~ 17447163 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021821 NA coding CM030130.1 CM030130.1 31028446 ~ 31039072 (+)