XLOC_021573


Basic Information

Item Value
gene id XLOC_021573
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17254498 ~ 17254757 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044668
GAATTTGACCTCTTTTGTGGCGTTTAATGTAATGGGCaatacaaatgtcttgatacctcaggctgttgatgttgccatccactctgcaaatttctcgcacacccccatgctgattataaccccaaaccatgatttttttccttcaccaaacttgacttatttctgtgagaatcttgagtccatgcgggttccaataggtcttctgcagtatttgtgatgattgggatgcagttcaaccgatgattcatctgaaaaatcta

Function

GO:

id name namespace
GO:0015801 aromatic amino acid transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0055085 transmembrane transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098793 presynapse cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044668 True 260 lncRNA 0.41 1 17254498 17254757

Neighbor

gene id symbol gene type direction distance location
XLOC_021571 BX927275.1 coding upstream 42692 17146315 ~ 17211806 (+)
XLOC_021570 commd7 coding upstream 140406 17102960 ~ 17114092 (+)
XLOC_021569 si:dkey-147f3.4 coding upstream 301262 16948049 ~ 16953236 (+)
XLOC_021568 si:dkey-147f3.8 coding upstream 309057 16928506 ~ 16945441 (+)
XLOC_021567 si:dkey-147f3.8 coding upstream 336307 16889152 ~ 16918191 (+)
XLOC_021574 SRMS coding downstream 99397 17354154 ~ 17385249 (+)
XLOC_021575 ptk6b coding downstream 132568 17387325 ~ 17404011 (+)
XLOC_021576 NA coding downstream 157768 17412525 ~ 17447163 (+)
XLOC_021577 BX649300.3 coding downstream 182797 17437554 ~ 17465232 (+)
XLOC_021578 NA coding downstream 218362 17473119 ~ 17477448 (+)
XLOC_021565 AL732515.2 non-coding upstream 395465 16858917 ~ 16859033 (+)
XLOC_021561 NA non-coding upstream 455776 16798100 ~ 16798722 (+)
XLOC_021556 CU041345.1 non-coding upstream 808458 16444961 ~ 16446040 (+)
XLOC_021554 NA non-coding upstream 847072 16406558 ~ 16407426 (+)
XLOC_021579 BX649300.4 non-coding downstream 246557 17501314 ~ 17501428 (+)
XLOC_021581 CR407550.1 non-coding downstream 402079 17656836 ~ 17659102 (+)
XLOC_021582 NA non-coding downstream 515667 17770424 ~ 17776345 (+)

Expression


Co-expression Network