XLOC_021582


Basic Information

Item Value
gene id XLOC_021582
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17770424 ~ 17776345 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044808
GGTGTCCTCCTCAGACACGGGCTGTGGCGGTGGCCAACGGGCCAGTGATGTGAGGAGATGCTTTGATGTGTGATGTGTTTGATGTAAAAGAAGATATGAGCCAGTGCTTTTATTTTACAGAGCACTTCAAGGATTTCATATGTACACGGAGAagagtttttttttgctttcatttatatttcattatttgctTCAGTGTGGATACATTTGGCTTTGTTCTGTCACCTATAATTTAGGCTCTCCTCTTGGTAGCCTTACGTAATCTTTGCATTTATCTATGCATGTAAAAAAAGTAATGATTTAATTATTCACACAATTCATGGTACAATATTAAAAGTACATTCGGATGTCCCCAGTCTATTTAAATTAACGTTCACTCGTAAGTGAAAATTAACTTATCATTTATTCTTCATaatgtggttttaaatctttatgagtttctttcgtctgttaaacacaaaagaagatgttttgaaaaatgttggtggaactcatcgacttccatagtaggaaaaaagcttctttttttttcaaaacatggGTCTTCATCCTTTCTCTGCGAGACCTTGGGGAtaaaacagacagagagagatgaCAACACATGCTATCTGAAAGCCTGCTACATTTTGGCTTCAGATGGATGGGAGCTTACGCTGGGATTTCTACCTGTCAGATAATGAGTGTGAGGAGAAAGGCTCTGGGAGTGAACTCAGTGGAAACATGAAAGAAGAGTCAAGAGCTCTGGTGAATTATTCCAGTCATCTCTAGACACGACTGAATGGTTGGACCCCAGAATGGATCGGTAAATTCAAAATGACTGAGCATCATCCTGTTGATAAGGGCATTATTAATGGAATTTGACTGATTTACCCAATaaatttctctctcacacacacatacacacacaaatgtttaGTTTGTATGAACTCATTGTGgctcagtacactgtaaaaaataaagctgggttccacaaaatcgatttgtgttgggacaacatgaaagaattaagttaacttatgagtttttacaaatttaagtggattgaacataaaactattaggTTGTCCACCCAAAAAGATC

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044808 True 1080 lncRNA 0.37 3 17770424 17776345

Neighbor

gene id symbol gene type direction distance location
XLOC_021581 CR407550.1 coding upstream 111322 17656836 ~ 17659102 (+)
XLOC_021580 gid8b coding upstream 219771 17509794 ~ 17550653 (+)
XLOC_021579 BX649300.4 coding upstream 268996 17501314 ~ 17501428 (+)
XLOC_021578 NA coding upstream 292976 17473119 ~ 17477448 (+)
XLOC_021577 BX649300.3 coding upstream 305192 17437554 ~ 17465232 (+)
XLOC_021583 CR381647.3 coding downstream 6163 17782508 ~ 17783044 (+)
XLOC_021584 dre-mir-124-5 coding downstream 7068 17783413 ~ 17783541 (+)
XLOC_021585 rnd1a coding downstream 24372 17800717 ~ 17815253 (+)
XLOC_021586 prim1 coding downstream 62842 17839187 ~ 17848907 (+)
XLOC_021587 naca coding downstream 89209 17865554 ~ 17876777 (+)
XLOC_021576 NA non-coding upstream 323261 17412525 ~ 17447163 (+)
XLOC_021573 NA non-coding upstream 515667 17254498 ~ 17254757 (+)
XLOC_021588 CR381647.1 non-coding downstream 97181 17873526 ~ 17873598 (+)
XLOC_021595 CR352232.1 non-coding downstream 353515 18129860 ~ 18132323 (+)
XLOC_021597 NA non-coding downstream 358121 18134466 ~ 18136294 (+)

Expression


Co-expression Network